Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2799 and EX28DRAFT_2800 overlap by 4 nucleotides EX28DRAFT_2800 and EX28DRAFT_2801 overlap by 56 nucleotides EX28DRAFT_2801 and EX28DRAFT_2802 are separated by 293 nucleotides
EX28DRAFT_2799: EX28DRAFT_2799 - Uncharacterized flavoproteins, at 101,659 to 103,107
_2799
EX28DRAFT_2800: EX28DRAFT_2800 - Pyridine nucleotide-disulphide oxidoreductase, at 103,104 to 104,237
_2800
EX28DRAFT_2801: EX28DRAFT_2801 - hypothetical protein, at 104,182 to 104,394
_2801
EX28DRAFT_2802: EX28DRAFT_2802 - high-affinity nickel-transporter, HoxN/HupN/NixA family, at 104,688 to 105,710
_2802
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.121 kb on + strand, within EX28DRAFT_2799 at 102.173 kb on - strand, within EX28DRAFT_2799 at 102.241 kb on + strand, within EX28DRAFT_2799 at 102.371 kb on + strand, within EX28DRAFT_2799 at 102.382 kb on + strand, within EX28DRAFT_2799 at 102.403 kb on + strand, within EX28DRAFT_2799 at 102.540 kb on + strand, within EX28DRAFT_2799 at 102.792 kb on + strand, within EX28DRAFT_2799 at 103.069 kb on - strand at 103.240 kb on + strand, within EX28DRAFT_2800 at 103.241 kb on - strand, within EX28DRAFT_2800 at 103.253 kb on + strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.596 kb on - strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.658 kb on - strand, within EX28DRAFT_2800 at 103.874 kb on - strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 104.063 kb on - strand, within EX28DRAFT_2800 at 104.227 kb on + strand at 104.287 kb on - strand, within EX28DRAFT_2801 at 104.311 kb on - strand, within EX28DRAFT_2801 at 104.314 kb on - strand, within EX28DRAFT_2801 at 104.697 kb on + strand at 104.697 kb on + strand at 104.697 kb on + strand at 104.698 kb on - strand at 104.929 kb on + strand, within EX28DRAFT_2802 at 104.929 kb on + strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.167 kb on + strand, within EX28DRAFT_2802
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 102,121 + EX28DRAFT_2799 0.32 -1.1 102,173 - EX28DRAFT_2799 0.35 -0.2 102,241 + EX28DRAFT_2799 0.40 +0.5 102,371 + EX28DRAFT_2799 0.49 -0.3 102,382 + EX28DRAFT_2799 0.50 -1.7 102,403 + EX28DRAFT_2799 0.51 +1.0 102,540 + EX28DRAFT_2799 0.61 -0.1 102,792 + EX28DRAFT_2799 0.78 +0.4 103,069 - +0.2 103,240 + EX28DRAFT_2800 0.12 -0.2 103,241 - EX28DRAFT_2800 0.12 -1.3 103,253 + EX28DRAFT_2800 0.13 +0.0 103,495 - EX28DRAFT_2800 0.34 +0.4 103,495 - EX28DRAFT_2800 0.34 -0.5 103,596 - EX28DRAFT_2800 0.43 +0.3 103,628 + EX28DRAFT_2800 0.46 -1.0 103,628 + EX28DRAFT_2800 0.46 -0.3 103,628 + EX28DRAFT_2800 0.46 -0.2 103,629 - EX28DRAFT_2800 0.46 -0.2 103,629 - EX28DRAFT_2800 0.46 -1.2 103,629 - EX28DRAFT_2800 0.46 -0.1 103,629 - EX28DRAFT_2800 0.46 +0.1 103,629 - EX28DRAFT_2800 0.46 +0.2 103,658 - EX28DRAFT_2800 0.49 +0.1 103,874 - EX28DRAFT_2800 0.68 +0.7 103,877 + EX28DRAFT_2800 0.68 -0.7 103,877 + EX28DRAFT_2800 0.68 -0.1 104,063 - EX28DRAFT_2800 0.85 -0.7 104,227 + +1.0 104,287 - EX28DRAFT_2801 0.49 -2.2 104,311 - EX28DRAFT_2801 0.61 +0.3 104,314 - EX28DRAFT_2801 0.62 -0.6 104,697 + -0.6 104,697 + +0.8 104,697 + +0.0 104,698 - +1.8 104,929 + EX28DRAFT_2802 0.24 -0.0 104,929 + EX28DRAFT_2802 0.24 +0.1 105,152 - EX28DRAFT_2802 0.45 -0.4 105,152 - EX28DRAFT_2802 0.45 +0.1 105,152 - EX28DRAFT_2802 0.45 +0.0 105,152 - EX28DRAFT_2802 0.45 +0.3 105,152 - EX28DRAFT_2802 0.45 -0.5 105,152 - EX28DRAFT_2802 0.45 -0.5 105,152 - EX28DRAFT_2802 0.45 -0.9 105,167 + EX28DRAFT_2802 0.47 -0.9
Or see this region's nucleotide sequence