Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2798 and EX28DRAFT_2799 are separated by 186 nucleotides EX28DRAFT_2799 and EX28DRAFT_2800 overlap by 4 nucleotides
EX28DRAFT_2798: EX28DRAFT_2798 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 99,958 to 101,472
_2798
EX28DRAFT_2799: EX28DRAFT_2799 - Uncharacterized flavoproteins, at 101,659 to 103,107
_2799
EX28DRAFT_2800: EX28DRAFT_2800 - Pyridine nucleotide-disulphide oxidoreductase, at 103,104 to 104,237
_2800
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 100.751 kb on + strand, within EX28DRAFT_2798 at 100.751 kb on + strand, within EX28DRAFT_2798 at 101.002 kb on + strand, within EX28DRAFT_2798 at 101.472 kb on + strand at 101.473 kb on - strand at 101.563 kb on + strand at 101.641 kb on + strand at 101.658 kb on + strand at 101.658 kb on + strand at 101.658 kb on + strand at 101.659 kb on - strand at 101.665 kb on - strand at 101.770 kb on + strand at 101.771 kb on - strand at 101.771 kb on - strand at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.879 kb on - strand, within EX28DRAFT_2799 at 101.879 kb on - strand, within EX28DRAFT_2799 at 101.939 kb on - strand, within EX28DRAFT_2799 at 101.939 kb on - strand, within EX28DRAFT_2799 at 101.956 kb on - strand, within EX28DRAFT_2799 at 101.956 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 102.121 kb on + strand, within EX28DRAFT_2799 at 102.173 kb on - strand, within EX28DRAFT_2799 at 102.241 kb on + strand, within EX28DRAFT_2799 at 102.371 kb on + strand, within EX28DRAFT_2799 at 102.382 kb on + strand, within EX28DRAFT_2799 at 102.403 kb on + strand, within EX28DRAFT_2799 at 102.540 kb on + strand, within EX28DRAFT_2799 at 102.792 kb on + strand, within EX28DRAFT_2799 at 103.069 kb on - strand at 103.240 kb on + strand, within EX28DRAFT_2800 at 103.241 kb on - strand, within EX28DRAFT_2800 at 103.253 kb on + strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.596 kb on - strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.658 kb on - strand, within EX28DRAFT_2800 at 103.874 kb on - strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 104.063 kb on - strand, within EX28DRAFT_2800
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 100,751 + EX28DRAFT_2798 0.52 -0.1 100,751 + EX28DRAFT_2798 0.52 +0.5 101,002 + EX28DRAFT_2798 0.69 -0.4 101,472 + -0.6 101,473 - +0.4 101,563 + -0.4 101,641 + -0.1 101,658 + +0.2 101,658 + +0.2 101,658 + +0.3 101,659 - +0.7 101,665 - +0.3 101,770 + -0.7 101,771 - +0.8 101,771 - -0.1 101,878 + EX28DRAFT_2799 0.15 -0.3 101,878 + EX28DRAFT_2799 0.15 -0.4 101,878 + EX28DRAFT_2799 0.15 -0.7 101,879 - EX28DRAFT_2799 0.15 +1.3 101,879 - EX28DRAFT_2799 0.15 -1.3 101,939 - EX28DRAFT_2799 0.19 -0.2 101,939 - EX28DRAFT_2799 0.19 +0.1 101,956 - EX28DRAFT_2799 0.20 -0.6 101,956 - EX28DRAFT_2799 0.20 -2.9 101,960 - EX28DRAFT_2799 0.21 +1.0 101,960 - EX28DRAFT_2799 0.21 +0.5 101,960 - EX28DRAFT_2799 0.21 -0.3 102,121 + EX28DRAFT_2799 0.32 -1.1 102,173 - EX28DRAFT_2799 0.35 -0.2 102,241 + EX28DRAFT_2799 0.40 +0.5 102,371 + EX28DRAFT_2799 0.49 -0.3 102,382 + EX28DRAFT_2799 0.50 -1.7 102,403 + EX28DRAFT_2799 0.51 +1.0 102,540 + EX28DRAFT_2799 0.61 -0.1 102,792 + EX28DRAFT_2799 0.78 +0.4 103,069 - +0.2 103,240 + EX28DRAFT_2800 0.12 -0.2 103,241 - EX28DRAFT_2800 0.12 -1.3 103,253 + EX28DRAFT_2800 0.13 +0.0 103,495 - EX28DRAFT_2800 0.34 +0.4 103,495 - EX28DRAFT_2800 0.34 -0.5 103,596 - EX28DRAFT_2800 0.43 +0.3 103,628 + EX28DRAFT_2800 0.46 -1.0 103,628 + EX28DRAFT_2800 0.46 -0.3 103,628 + EX28DRAFT_2800 0.46 -0.2 103,629 - EX28DRAFT_2800 0.46 -0.2 103,629 - EX28DRAFT_2800 0.46 -1.2 103,629 - EX28DRAFT_2800 0.46 -0.1 103,629 - EX28DRAFT_2800 0.46 +0.1 103,629 - EX28DRAFT_2800 0.46 +0.2 103,658 - EX28DRAFT_2800 0.49 +0.1 103,874 - EX28DRAFT_2800 0.68 +0.7 103,877 + EX28DRAFT_2800 0.68 -0.7 103,877 + EX28DRAFT_2800 0.68 -0.1 104,063 - EX28DRAFT_2800 0.85 -0.7
Or see this region's nucleotide sequence