Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2702 and EX28DRAFT_2703 are separated by 214 nucleotides EX28DRAFT_2703 and EX28DRAFT_2704 are separated by 92 nucleotides EX28DRAFT_2704 and EX28DRAFT_2705 overlap by 8 nucleotides
EX28DRAFT_2702: EX28DRAFT_2702 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 9,883 to 10,953
_2702
EX28DRAFT_2703: EX28DRAFT_2703 - Protein of unknown function (DUF2799), at 11,168 to 11,542
_2703
EX28DRAFT_2704: EX28DRAFT_2704 - Domain of unknown function (DUF4154), at 11,635 to 12,231
_2704
EX28DRAFT_2705: EX28DRAFT_2705 - diguanylate cyclase (GGDEF) domain, at 12,224 to 13,444
_2705
Position (kb)
11
12 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 10.233 kb on + strand, within EX28DRAFT_2702 at 10.233 kb on + strand, within EX28DRAFT_2702 at 10.297 kb on + strand, within EX28DRAFT_2702 at 10.297 kb on + strand, within EX28DRAFT_2702 at 10.298 kb on - strand, within EX28DRAFT_2702 at 10.689 kb on - strand, within EX28DRAFT_2702 at 10.737 kb on - strand, within EX28DRAFT_2702 at 10.780 kb on + strand, within EX28DRAFT_2702 at 10.924 kb on - strand at 10.924 kb on - strand at 10.924 kb on - strand at 10.924 kb on - strand at 10.927 kb on + strand at 10.927 kb on + strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 10.928 kb on - strand at 11.076 kb on + strand at 11.311 kb on + strand, within EX28DRAFT_2703 at 11.364 kb on - strand, within EX28DRAFT_2703 at 11.413 kb on + strand, within EX28DRAFT_2703 at 11.518 kb on + strand at 11.518 kb on + strand at 11.540 kb on + strand at 11.545 kb on + strand at 11.576 kb on - strand at 11.588 kb on - strand at 11.604 kb on - strand at 11.614 kb on + strand at 11.615 kb on - strand at 11.657 kb on + strand at 11.657 kb on + strand at 11.667 kb on + strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.668 kb on - strand at 11.754 kb on + strand, within EX28DRAFT_2704 at 11.754 kb on + strand, within EX28DRAFT_2704 at 11.755 kb on - strand, within EX28DRAFT_2704 at 11.755 kb on - strand, within EX28DRAFT_2704 at 11.784 kb on + strand, within EX28DRAFT_2704 at 11.866 kb on - strand, within EX28DRAFT_2704 at 11.896 kb on - strand, within EX28DRAFT_2704 at 11.934 kb on - strand, within EX28DRAFT_2704 at 11.939 kb on - strand, within EX28DRAFT_2704 at 11.939 kb on - strand, within EX28DRAFT_2704 at 11.941 kb on - strand, within EX28DRAFT_2704 at 11.998 kb on + strand, within EX28DRAFT_2704 at 12.066 kb on - strand, within EX28DRAFT_2704 at 12.068 kb on + strand, within EX28DRAFT_2704 at 12.138 kb on - strand, within EX28DRAFT_2704 at 12.138 kb on - strand, within EX28DRAFT_2704 at 12.180 kb on - strand at 12.198 kb on - strand at 12.198 kb on - strand at 12.216 kb on + strand at 12.217 kb on - strand at 12.230 kb on - strand at 12.291 kb on + strand at 12.291 kb on + strand at 12.315 kb on + strand at 12.316 kb on - strand at 12.319 kb on - strand at 12.503 kb on - strand, within EX28DRAFT_2705
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 10,233 + EX28DRAFT_2702 0.33 +0.5 10,233 + EX28DRAFT_2702 0.33 -1.1 10,297 + EX28DRAFT_2702 0.39 -4.7 10,297 + EX28DRAFT_2702 0.39 -3.3 10,298 - EX28DRAFT_2702 0.39 -2.1 10,689 - EX28DRAFT_2702 0.75 -2.9 10,737 - EX28DRAFT_2702 0.80 -0.8 10,780 + EX28DRAFT_2702 0.84 -2.6 10,924 - -2.4 10,924 - -4.2 10,924 - -1.8 10,924 - +1.1 10,927 + -1.9 10,927 + -3.6 10,928 - -0.9 10,928 - -3.3 10,928 - -3.7 10,928 - -0.6 10,928 - -6.3 10,928 - -3.8 11,076 + -0.1 11,311 + EX28DRAFT_2703 0.38 +1.0 11,364 - EX28DRAFT_2703 0.52 +2.0 11,413 + EX28DRAFT_2703 0.65 +0.2 11,518 + -0.4 11,518 + -3.0 11,540 + -0.6 11,545 + -0.5 11,576 - -0.5 11,588 - +0.5 11,604 - -0.5 11,614 + -0.4 11,615 - -0.1 11,657 + -1.7 11,657 + +0.5 11,667 + +1.2 11,668 - +1.1 11,668 - +0.4 11,668 - -1.8 11,668 - +0.3 11,754 + EX28DRAFT_2704 0.20 +0.8 11,754 + EX28DRAFT_2704 0.20 +0.8 11,755 - EX28DRAFT_2704 0.20 -0.4 11,755 - EX28DRAFT_2704 0.20 +2.7 11,784 + EX28DRAFT_2704 0.25 +0.5 11,866 - EX28DRAFT_2704 0.39 +0.3 11,896 - EX28DRAFT_2704 0.44 -0.7 11,934 - EX28DRAFT_2704 0.50 +0.1 11,939 - EX28DRAFT_2704 0.51 +0.1 11,939 - EX28DRAFT_2704 0.51 -1.2 11,941 - EX28DRAFT_2704 0.51 -0.2 11,998 + EX28DRAFT_2704 0.61 -0.1 12,066 - EX28DRAFT_2704 0.72 +0.9 12,068 + EX28DRAFT_2704 0.73 -0.2 12,138 - EX28DRAFT_2704 0.84 -0.8 12,138 - EX28DRAFT_2704 0.84 +0.3 12,180 - +0.7 12,198 - -0.5 12,198 - -0.9 12,216 + -2.2 12,217 - +0.4 12,230 - -0.3 12,291 + +0.0 12,291 + -1.2 12,315 + -0.3 12,316 - -0.5 12,319 - +0.4 12,503 - EX28DRAFT_2705 0.23 -0.7
Or see this region's nucleotide sequence