Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2699 and EX28DRAFT_2700 overlap by 4 nucleotides EX28DRAFT_2700 and EX28DRAFT_2701 are separated by 60 nucleotides EX28DRAFT_2701 and EX28DRAFT_2702 are separated by 10 nucleotides
EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821
_2699
EX28DRAFT_2700: EX28DRAFT_2700 - Gluconolactonase, at 7,818 to 8,690
_2700
EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872
_2701
EX28DRAFT_2702: EX28DRAFT_2702 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 9,883 to 10,953
_2702
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 7.820 kb on - strand at 7.894 kb on + strand at 7.919 kb on + strand, within EX28DRAFT_2700 at 7.940 kb on + strand, within EX28DRAFT_2700 at 7.941 kb on - strand, within EX28DRAFT_2700 at 8.327 kb on - strand, within EX28DRAFT_2700 at 8.391 kb on - strand, within EX28DRAFT_2700 at 8.475 kb on - strand, within EX28DRAFT_2700 at 8.608 kb on + strand at 8.663 kb on - strand at 8.663 kb on - strand at 8.736 kb on - strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.740 kb on - strand at 8.740 kb on - strand at 8.740 kb on - strand at 8.740 kb on - strand at 8.911 kb on + strand, within EX28DRAFT_2701 at 8.912 kb on - strand, within EX28DRAFT_2701 at 8.951 kb on + strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.955 kb on - strand, within EX28DRAFT_2701 at 8.966 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.023 kb on + strand, within EX28DRAFT_2701 at 9.625 kb on + strand, within EX28DRAFT_2701 at 9.872 kb on + strand at 9.873 kb on - strand at 9.877 kb on - strand at 9.884 kb on + strand at 9.885 kb on - strand at 10.031 kb on - strand, within EX28DRAFT_2702 at 10.134 kb on + strand, within EX28DRAFT_2702 at 10.159 kb on + strand, within EX28DRAFT_2702 at 10.160 kb on - strand, within EX28DRAFT_2702 at 10.233 kb on + strand, within EX28DRAFT_2702 at 10.233 kb on + strand, within EX28DRAFT_2702 at 10.297 kb on + strand, within EX28DRAFT_2702 at 10.297 kb on + strand, within EX28DRAFT_2702 at 10.298 kb on - strand, within EX28DRAFT_2702 at 10.689 kb on - strand, within EX28DRAFT_2702 at 10.737 kb on - strand, within EX28DRAFT_2702 at 10.780 kb on + strand, within EX28DRAFT_2702
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 7,820 - -0.9 7,894 + +0.2 7,919 + EX28DRAFT_2700 0.12 +0.0 7,940 + EX28DRAFT_2700 0.14 -0.1 7,941 - EX28DRAFT_2700 0.14 +0.3 8,327 - EX28DRAFT_2700 0.58 -1.4 8,391 - EX28DRAFT_2700 0.66 +0.1 8,475 - EX28DRAFT_2700 0.75 +0.1 8,608 + +0.0 8,663 - -0.4 8,663 - +0.9 8,736 - +0.1 8,739 + +0.7 8,739 + -0.0 8,739 + -0.1 8,739 + +0.3 8,739 + -0.3 8,740 - +0.0 8,740 - -3.8 8,740 - +1.2 8,740 - -0.4 8,911 + EX28DRAFT_2701 0.14 -1.8 8,912 - EX28DRAFT_2701 0.14 -1.6 8,951 + EX28DRAFT_2701 0.18 -0.9 8,952 - EX28DRAFT_2701 0.18 -1.7 8,952 - EX28DRAFT_2701 0.18 -0.7 8,952 - EX28DRAFT_2701 0.18 -2.2 8,955 - EX28DRAFT_2701 0.18 +0.1 8,966 - EX28DRAFT_2701 0.19 -4.3 9,020 - EX28DRAFT_2701 0.24 -3.5 9,020 - EX28DRAFT_2701 0.24 -1.5 9,020 - EX28DRAFT_2701 0.24 -1.7 9,023 + EX28DRAFT_2701 0.24 -2.4 9,625 + EX28DRAFT_2701 0.78 -3.2 9,872 + -3.0 9,873 - -1.1 9,877 - -2.2 9,884 + +0.5 9,885 - +0.2 10,031 - EX28DRAFT_2702 0.14 -1.1 10,134 + EX28DRAFT_2702 0.23 -2.8 10,159 + EX28DRAFT_2702 0.26 -0.7 10,160 - EX28DRAFT_2702 0.26 -2.6 10,233 + EX28DRAFT_2702 0.33 +0.5 10,233 + EX28DRAFT_2702 0.33 -1.1 10,297 + EX28DRAFT_2702 0.39 -4.7 10,297 + EX28DRAFT_2702 0.39 -3.3 10,298 - EX28DRAFT_2702 0.39 -2.1 10,689 - EX28DRAFT_2702 0.75 -2.9 10,737 - EX28DRAFT_2702 0.80 -0.8 10,780 + EX28DRAFT_2702 0.84 -2.6
Or see this region's nucleotide sequence