Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2696 and EX28DRAFT_2697 are separated by 274 nucleotides EX28DRAFT_2697 and EX28DRAFT_2698 are separated by 110 nucleotides EX28DRAFT_2698 and EX28DRAFT_2699 are separated by 30 nucleotides
EX28DRAFT_2696: EX28DRAFT_2696 - Beta-barrel assembly machine subunit BamD, at 5,041 to 5,778
_2696
EX28DRAFT_2697: EX28DRAFT_2697 - ribosomal subunit interface protein, at 6,053 to 6,394
_2697
EX28DRAFT_2698: EX28DRAFT_2698 - RNA, at 6,505 to 6,630
_2698
EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821
_2699
Position (kb) 6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5.839 kb on - strand at 5.883 kb on - strand at 6.002 kb on + strand at 6.003 kb on - strand at 6.046 kb on - strand at 6.212 kb on - strand, within EX28DRAFT_2697 at 6.212 kb on - strand, within EX28DRAFT_2697 at 6.212 kb on - strand, within EX28DRAFT_2697 at 6.212 kb on - strand, within EX28DRAFT_2697 at 6.217 kb on + strand, within EX28DRAFT_2697 at 6.217 kb on + strand, within EX28DRAFT_2697 at 6.260 kb on - strand, within EX28DRAFT_2697 at 6.263 kb on + strand, within EX28DRAFT_2697 at 6.264 kb on - strand, within EX28DRAFT_2697 at 6.392 kb on + strand at 6.392 kb on + strand at 6.393 kb on - strand at 6.393 kb on - strand at 6.629 kb on - strand at 6.640 kb on + strand at 6.660 kb on + strand at 6.660 kb on + strand at 6.660 kb on + strand at 6.661 kb on - strand at 6.661 kb on - strand at 6.874 kb on + strand, within EX28DRAFT_2699 at 6.875 kb on - strand, within EX28DRAFT_2699 at 6.952 kb on - strand, within EX28DRAFT_2699 at 7.004 kb on - strand, within EX28DRAFT_2699 at 7.027 kb on + strand, within EX28DRAFT_2699 at 7.028 kb on - strand, within EX28DRAFT_2699 at 7.053 kb on + strand, within EX28DRAFT_2699 at 7.168 kb on + strand, within EX28DRAFT_2699 at 7.169 kb on - strand, within EX28DRAFT_2699
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 5,839 - -0.1 5,883 - +0.4 6,002 + -0.7 6,003 - +0.4 6,046 - -0.0 6,212 - EX28DRAFT_2697 0.46 -0.2 6,212 - EX28DRAFT_2697 0.46 -0.4 6,212 - EX28DRAFT_2697 0.46 +1.8 6,212 - EX28DRAFT_2697 0.46 +0.2 6,217 + EX28DRAFT_2697 0.48 +0.3 6,217 + EX28DRAFT_2697 0.48 +0.6 6,260 - EX28DRAFT_2697 0.61 +1.5 6,263 + EX28DRAFT_2697 0.61 +0.8 6,264 - EX28DRAFT_2697 0.62 -0.3 6,392 + +0.1 6,392 + +0.8 6,393 - +1.8 6,393 - +0.6 6,629 - -2.4 6,640 + +0.0 6,660 + -3.9 6,660 + -3.1 6,660 + -1.9 6,661 - -3.9 6,661 - -4.2 6,874 + EX28DRAFT_2699 0.18 -2.8 6,875 - EX28DRAFT_2699 0.18 -4.4 6,952 - EX28DRAFT_2699 0.25 +1.1 7,004 - EX28DRAFT_2699 0.30 +0.5 7,027 + EX28DRAFT_2699 0.32 -1.4 7,028 - EX28DRAFT_2699 0.32 -3.9 7,053 + EX28DRAFT_2699 0.34 -3.3 7,168 + EX28DRAFT_2699 0.44 -0.4 7,169 - EX28DRAFT_2699 0.44 -2.1
Or see this region's nucleotide sequence