Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2546 and EX28DRAFT_2547 overlap by 38 nucleotides EX28DRAFT_2547 and EX28DRAFT_2548 are separated by 67 nucleotides EX28DRAFT_2548 and EX28DRAFT_2549 are separated by 191 nucleotides EX28DRAFT_2549 and EX28DRAFT_2550 are separated by 0 nucleotides
EX28DRAFT_2546: EX28DRAFT_2546 - 2-dehydropantoate 2-reductase, at 2,578,572 to 2,579,483
_2546
EX28DRAFT_2547: EX28DRAFT_2547 - DJ-1 family protein, at 2,579,446 to 2,580,036
_2547
EX28DRAFT_2548: EX28DRAFT_2548 - tRNA sulfurtransferase ThiI/thiazole biosynthesis domain, at 2,580,104 to 2,581,552
_2548
EX28DRAFT_2549: EX28DRAFT_2549 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 2,581,744 to 2,581,986
_2549
EX28DRAFT_2550: EX28DRAFT_2550 - Geranylgeranyl pyrophosphate synthase, at 2,581,987 to 2,582,886
_2550
Position (kb)
2580
2581
2582 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2579.234 kb on + strand, within EX28DRAFT_2546 at 2579.235 kb on - strand, within EX28DRAFT_2546 at 2579.259 kb on + strand, within EX28DRAFT_2546 at 2579.260 kb on - strand, within EX28DRAFT_2546 at 2579.295 kb on - strand, within EX28DRAFT_2546 at 2579.432 kb on + strand at 2579.446 kb on - strand at 2579.446 kb on - strand at 2579.506 kb on - strand, within EX28DRAFT_2547 at 2579.980 kb on + strand at 2580.019 kb on + strand at 2580.025 kb on + strand at 2580.025 kb on + strand at 2580.025 kb on + strand at 2580.026 kb on - strand at 2580.028 kb on + strand at 2580.034 kb on + strand at 2580.034 kb on + strand at 2580.034 kb on + strand at 2580.034 kb on + strand at 2580.035 kb on - strand at 2580.035 kb on - strand at 2580.035 kb on - strand at 2580.106 kb on - strand at 2581.014 kb on - strand, within EX28DRAFT_2548 at 2581.131 kb on - strand, within EX28DRAFT_2548 at 2581.452 kb on - strand at 2581.452 kb on - strand at 2581.452 kb on - strand at 2581.537 kb on + strand at 2581.591 kb on - strand at 2581.643 kb on + strand at 2581.643 kb on + strand at 2581.644 kb on - strand at 2581.644 kb on - strand at 2581.644 kb on - strand at 2581.645 kb on + strand at 2581.726 kb on + strand at 2581.726 kb on + strand at 2581.728 kb on + strand at 2581.728 kb on + strand at 2581.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,579,234 + EX28DRAFT_2546 0.73 -1.8 2,579,235 - EX28DRAFT_2546 0.73 -2.8 2,579,259 + EX28DRAFT_2546 0.75 -2.7 2,579,260 - EX28DRAFT_2546 0.75 -2.0 2,579,295 - EX28DRAFT_2546 0.79 -1.0 2,579,432 + +1.0 2,579,446 - -0.0 2,579,446 - +0.7 2,579,506 - EX28DRAFT_2547 0.10 +0.3 2,579,980 + -0.2 2,580,019 + -0.2 2,580,025 + +0.3 2,580,025 + +0.2 2,580,025 + +1.2 2,580,026 - +0.5 2,580,028 + +0.1 2,580,034 + -0.3 2,580,034 + -0.0 2,580,034 + +0.5 2,580,034 + +0.3 2,580,035 - -0.1 2,580,035 - +0.4 2,580,035 - -0.8 2,580,106 - +0.4 2,581,014 - EX28DRAFT_2548 0.63 -3.3 2,581,131 - EX28DRAFT_2548 0.71 -4.0 2,581,452 - -3.0 2,581,452 - -2.2 2,581,452 - -1.2 2,581,537 + -4.8 2,581,591 - +0.0 2,581,643 + -0.4 2,581,643 + -0.7 2,581,644 - +0.5 2,581,644 - +0.1 2,581,644 - -0.4 2,581,645 + +0.1 2,581,726 + +0.8 2,581,726 + -0.8 2,581,728 + -0.6 2,581,728 + +0.3 2,581,728 + -0.3
Or see this region's nucleotide sequence