Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2546

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2544 and EX28DRAFT_2545 are separated by 32 nucleotidesEX28DRAFT_2545 and EX28DRAFT_2546 are separated by 121 nucleotidesEX28DRAFT_2546 and EX28DRAFT_2547 overlap by 38 nucleotidesEX28DRAFT_2547 and EX28DRAFT_2548 are separated by 67 nucleotides EX28DRAFT_2544: EX28DRAFT_2544 - Arabinose efflux permease, at 2,576,565 to 2,577,926 _2544 EX28DRAFT_2545: EX28DRAFT_2545 - Uncharacterized protein conserved in bacteria, at 2,577,959 to 2,578,450 _2545 EX28DRAFT_2546: EX28DRAFT_2546 - 2-dehydropantoate 2-reductase, at 2,578,572 to 2,579,483 _2546 EX28DRAFT_2547: EX28DRAFT_2547 - DJ-1 family protein, at 2,579,446 to 2,580,036 _2547 EX28DRAFT_2548: EX28DRAFT_2548 - tRNA sulfurtransferase ThiI/thiazole biosynthesis domain, at 2,580,104 to 2,581,552 _2548 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2577.591 kb on + strand, within EX28DRAFT_2544at 2577.592 kb on - strand, within EX28DRAFT_2544at 2577.741 kb on + strand, within EX28DRAFT_2544at 2577.797 kb on + strandat 2577.798 kb on - strandat 2577.874 kb on + strandat 2577.874 kb on + strandat 2578.093 kb on + strand, within EX28DRAFT_2545at 2578.093 kb on + strand, within EX28DRAFT_2545at 2578.109 kb on - strand, within EX28DRAFT_2545at 2578.109 kb on - strand, within EX28DRAFT_2545at 2578.111 kb on + strand, within EX28DRAFT_2545at 2578.111 kb on + strand, within EX28DRAFT_2545at 2578.111 kb on + strand, within EX28DRAFT_2545at 2578.112 kb on - strand, within EX28DRAFT_2545at 2578.112 kb on - strand, within EX28DRAFT_2545at 2578.307 kb on - strand, within EX28DRAFT_2545at 2578.484 kb on + strandat 2578.519 kb on + strandat 2578.525 kb on + strandat 2578.526 kb on - strandat 2578.527 kb on + strandat 2578.528 kb on - strandat 2578.531 kb on + strandat 2578.531 kb on + strandat 2578.532 kb on - strandat 2578.678 kb on - strand, within EX28DRAFT_2546at 2578.772 kb on - strand, within EX28DRAFT_2546at 2579.017 kb on - strand, within EX28DRAFT_2546at 2579.234 kb on + strand, within EX28DRAFT_2546at 2579.235 kb on - strand, within EX28DRAFT_2546at 2579.259 kb on + strand, within EX28DRAFT_2546at 2579.260 kb on - strand, within EX28DRAFT_2546at 2579.295 kb on - strand, within EX28DRAFT_2546at 2579.432 kb on + strandat 2579.446 kb on - strandat 2579.446 kb on - strandat 2579.506 kb on - strand, within EX28DRAFT_2547at 2579.980 kb on + strandat 2580.019 kb on + strandat 2580.025 kb on + strandat 2580.025 kb on + strandat 2580.025 kb on + strandat 2580.026 kb on - strandat 2580.028 kb on + strandat 2580.034 kb on + strandat 2580.034 kb on + strandat 2580.034 kb on + strandat 2580.034 kb on + strandat 2580.035 kb on - strandat 2580.035 kb on - strandat 2580.035 kb on - strandat 2580.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,577,591 + EX28DRAFT_2544 0.75 +0.1
2,577,592 - EX28DRAFT_2544 0.75 +1.2
2,577,741 + EX28DRAFT_2544 0.86 +0.3
2,577,797 + -0.6
2,577,798 - +0.9
2,577,874 + -0.2
2,577,874 + +3.0
2,578,093 + EX28DRAFT_2545 0.27 +0.5
2,578,093 + EX28DRAFT_2545 0.27 -0.7
2,578,109 - EX28DRAFT_2545 0.30 -0.7
2,578,109 - EX28DRAFT_2545 0.30 +0.1
2,578,111 + EX28DRAFT_2545 0.31 -0.4
2,578,111 + EX28DRAFT_2545 0.31 +0.9
2,578,111 + EX28DRAFT_2545 0.31 -0.0
2,578,112 - EX28DRAFT_2545 0.31 -0.2
2,578,112 - EX28DRAFT_2545 0.31 +0.1
2,578,307 - EX28DRAFT_2545 0.71 -0.6
2,578,484 + -0.1
2,578,519 + -0.1
2,578,525 + -0.8
2,578,526 - -0.1
2,578,527 + +0.0
2,578,528 - +0.3
2,578,531 + +0.1
2,578,531 + +0.1
2,578,532 - +0.3
2,578,678 - EX28DRAFT_2546 0.12 -2.4
2,578,772 - EX28DRAFT_2546 0.22 -2.2
2,579,017 - EX28DRAFT_2546 0.49 -2.4
2,579,234 + EX28DRAFT_2546 0.73 -1.8
2,579,235 - EX28DRAFT_2546 0.73 -2.8
2,579,259 + EX28DRAFT_2546 0.75 -2.7
2,579,260 - EX28DRAFT_2546 0.75 -2.0
2,579,295 - EX28DRAFT_2546 0.79 -1.0
2,579,432 + +1.0
2,579,446 - -0.0
2,579,446 - +0.7
2,579,506 - EX28DRAFT_2547 0.10 +0.3
2,579,980 + -0.2
2,580,019 + -0.2
2,580,025 + +0.3
2,580,025 + +0.2
2,580,025 + +1.2
2,580,026 - +0.5
2,580,028 + +0.1
2,580,034 + -0.3
2,580,034 + -0.0
2,580,034 + +0.5
2,580,034 + +0.3
2,580,035 - -0.1
2,580,035 - +0.4
2,580,035 - -0.8
2,580,106 - +0.4

Or see this region's nucleotide sequence