Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2539 and EX28DRAFT_2540 are separated by 16 nucleotides EX28DRAFT_2540 and EX28DRAFT_2541 overlap by 11 nucleotides EX28DRAFT_2541 and EX28DRAFT_2542 overlap by 1 nucleotides EX28DRAFT_2542 and EX28DRAFT_2543 are separated by 11 nucleotides
EX28DRAFT_2539: EX28DRAFT_2539 - cytochrome o ubiquinol oxidase subunit II, at 2,571,632 to 2,572,579
_2539
EX28DRAFT_2540: EX28DRAFT_2540 - cytochrome o ubiquinol oxidase, subunit I, at 2,572,596 to 2,574,587
_2540
EX28DRAFT_2541: EX28DRAFT_2541 - cytochrome o ubiquinol oxidase, subunit III, at 2,574,577 to 2,575,191
_2541
EX28DRAFT_2542: EX28DRAFT_2542 - cytochrome o ubiquinol oxidase subunit IV, at 2,575,191 to 2,575,517
_2542
EX28DRAFT_2543: EX28DRAFT_2543 - protoheme IX farnesyltransferase, at 2,575,529 to 2,576,416
_2543
Position (kb)
2572
2573
2574
2575 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2571.691 kb on - strand at 2571.863 kb on + strand, within EX28DRAFT_2539 at 2571.863 kb on + strand, within EX28DRAFT_2539 at 2571.864 kb on - strand, within EX28DRAFT_2539 at 2571.866 kb on - strand, within EX28DRAFT_2539 at 2571.920 kb on - strand, within EX28DRAFT_2539 at 2572.012 kb on + strand, within EX28DRAFT_2539 at 2572.238 kb on + strand, within EX28DRAFT_2539 at 2572.239 kb on - strand, within EX28DRAFT_2539 at 2572.247 kb on - strand, within EX28DRAFT_2539 at 2572.247 kb on - strand, within EX28DRAFT_2539 at 2572.537 kb on + strand at 2573.232 kb on - strand, within EX28DRAFT_2540 at 2573.280 kb on - strand, within EX28DRAFT_2540 at 2573.312 kb on + strand, within EX28DRAFT_2540 at 2573.418 kb on + strand, within EX28DRAFT_2540 at 2573.418 kb on + strand, within EX28DRAFT_2540 at 2573.419 kb on - strand, within EX28DRAFT_2540 at 2573.458 kb on - strand, within EX28DRAFT_2540 at 2573.626 kb on + strand, within EX28DRAFT_2540 at 2574.030 kb on - strand, within EX28DRAFT_2540 at 2574.715 kb on + strand, within EX28DRAFT_2541 at 2575.169 kb on + strand at 2575.190 kb on - strand at 2575.323 kb on - strand, within EX28DRAFT_2542 at 2575.419 kb on - strand, within EX28DRAFT_2542 at 2575.497 kb on + strand at 2575.498 kb on - strand at 2575.515 kb on + strand at 2575.529 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,571,691 - +2.3 2,571,863 + EX28DRAFT_2539 0.24 +2.9 2,571,863 + EX28DRAFT_2539 0.24 +2.2 2,571,864 - EX28DRAFT_2539 0.24 +1.2 2,571,866 - EX28DRAFT_2539 0.25 +0.2 2,571,920 - EX28DRAFT_2539 0.30 +2.0 2,572,012 + EX28DRAFT_2539 0.40 +1.3 2,572,238 + EX28DRAFT_2539 0.64 -0.1 2,572,239 - EX28DRAFT_2539 0.64 +1.5 2,572,247 - EX28DRAFT_2539 0.65 +1.4 2,572,247 - EX28DRAFT_2539 0.65 +0.6 2,572,537 + +1.8 2,573,232 - EX28DRAFT_2540 0.32 +2.5 2,573,280 - EX28DRAFT_2540 0.34 +2.3 2,573,312 + EX28DRAFT_2540 0.36 +1.9 2,573,418 + EX28DRAFT_2540 0.41 +0.7 2,573,418 + EX28DRAFT_2540 0.41 +1.1 2,573,419 - EX28DRAFT_2540 0.41 +1.2 2,573,458 - EX28DRAFT_2540 0.43 +0.7 2,573,626 + EX28DRAFT_2540 0.52 +2.2 2,574,030 - EX28DRAFT_2540 0.72 +0.8 2,574,715 + EX28DRAFT_2541 0.22 +0.9 2,575,169 + +1.3 2,575,190 - +0.7 2,575,323 - EX28DRAFT_2542 0.40 +0.6 2,575,419 - EX28DRAFT_2542 0.70 +0.2 2,575,497 + +0.4 2,575,498 - +2.8 2,575,515 + +2.2 2,575,529 - +1.1
Or see this region's nucleotide sequence