Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2529 and EX28DRAFT_2530 are separated by 212 nucleotides EX28DRAFT_2530 and EX28DRAFT_2531 are separated by 210 nucleotides EX28DRAFT_2531 and EX28DRAFT_2532 are separated by 69 nucleotides EX28DRAFT_2532 and EX28DRAFT_2533 are separated by 19 nucleotides
EX28DRAFT_2529: EX28DRAFT_2529 - Parvulin-like peptidyl-prolyl isomerase, at 2,559,413 to 2,561,284
_2529
EX28DRAFT_2530: EX28DRAFT_2530 - Bacterial nucleoid DNA-binding protein, at 2,561,497 to 2,561,769
_2530
EX28DRAFT_2531: EX28DRAFT_2531 - endopeptidase La, at 2,561,980 to 2,564,334
_2531
EX28DRAFT_2532: EX28DRAFT_2532 - RNA, at 2,564,404 to 2,564,497
_2532
EX28DRAFT_2533: EX28DRAFT_2533 - endopeptidase Clp ATP-binding regulatory subunit (clpX), at 2,564,517 to 2,565,791
_2533
Position (kb)
2561
2562
2563
2564
2565 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2561.163 kb on + strand at 2561.188 kb on - strand at 2561.271 kb on - strand at 2561.290 kb on - strand at 2561.362 kb on - strand at 2561.465 kb on + strand at 2561.466 kb on - strand at 2561.524 kb on - strand at 2561.686 kb on + strand, within EX28DRAFT_2530 at 2561.695 kb on + strand, within EX28DRAFT_2530 at 2561.788 kb on - strand at 2561.795 kb on - strand at 2561.795 kb on - strand at 2561.836 kb on + strand at 2561.858 kb on + strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.886 kb on - strand at 2561.886 kb on - strand at 2561.886 kb on - strand at 2561.898 kb on - strand at 2561.902 kb on + strand at 2561.902 kb on + strand at 2561.906 kb on + strand at 2561.907 kb on - strand at 2561.908 kb on + strand at 2561.940 kb on + strand at 2561.941 kb on - strand at 2561.955 kb on + strand at 2563.205 kb on + strand, within EX28DRAFT_2531 at 2563.205 kb on + strand, within EX28DRAFT_2531 at 2563.206 kb on - strand, within EX28DRAFT_2531 at 2563.209 kb on + strand, within EX28DRAFT_2531 at 2563.210 kb on - strand, within EX28DRAFT_2531 at 2563.210 kb on - strand, within EX28DRAFT_2531 at 2563.989 kb on - strand, within EX28DRAFT_2531 at 2564.035 kb on - strand, within EX28DRAFT_2531 at 2564.352 kb on - strand at 2564.401 kb on - strand at 2564.401 kb on - strand at 2564.408 kb on - strand at 2564.408 kb on - strand at 2564.415 kb on - strand, within EX28DRAFT_2532 at 2564.415 kb on - strand, within EX28DRAFT_2532 at 2564.416 kb on + strand, within EX28DRAFT_2532 at 2564.489 kb on - strand at 2565.273 kb on + strand, within EX28DRAFT_2533 at 2565.273 kb on + strand, within EX28DRAFT_2533
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,561,163 + -0.4 2,561,188 - -1.2 2,561,271 - -0.5 2,561,290 - -0.3 2,561,362 - -1.0 2,561,465 + +0.4 2,561,466 - -1.5 2,561,524 - -1.8 2,561,686 + EX28DRAFT_2530 0.69 -1.4 2,561,695 + EX28DRAFT_2530 0.73 -0.5 2,561,788 - -1.6 2,561,795 - -0.6 2,561,795 - -0.8 2,561,836 + -1.2 2,561,858 + -1.4 2,561,859 - -0.4 2,561,859 - -0.9 2,561,859 - -1.2 2,561,859 - +0.4 2,561,886 - -0.3 2,561,886 - -0.2 2,561,886 - -0.3 2,561,898 - +0.2 2,561,902 + +0.2 2,561,902 + +0.1 2,561,906 + +0.4 2,561,907 - -1.0 2,561,908 + -0.1 2,561,940 + -1.5 2,561,941 - +0.5 2,561,955 + +0.1 2,563,205 + EX28DRAFT_2531 0.52 -2.6 2,563,205 + EX28DRAFT_2531 0.52 -2.1 2,563,206 - EX28DRAFT_2531 0.52 +0.0 2,563,209 + EX28DRAFT_2531 0.52 -2.1 2,563,210 - EX28DRAFT_2531 0.52 -2.5 2,563,210 - EX28DRAFT_2531 0.52 -5.6 2,563,989 - EX28DRAFT_2531 0.85 -3.9 2,564,035 - EX28DRAFT_2531 0.87 -1.4 2,564,352 - -1.0 2,564,401 - -2.7 2,564,401 - +0.1 2,564,408 - -0.2 2,564,408 - +1.0 2,564,415 - EX28DRAFT_2532 0.12 -0.1 2,564,415 - EX28DRAFT_2532 0.12 +0.1 2,564,416 + EX28DRAFT_2532 0.13 -1.1 2,564,489 - -0.3 2,565,273 + EX28DRAFT_2533 0.59 -2.4 2,565,273 + EX28DRAFT_2533 0.59 -1.2
Or see this region's nucleotide sequence