Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2523 and EX28DRAFT_2524 are separated by 41 nucleotides EX28DRAFT_2524 and EX28DRAFT_2525 are separated by 101 nucleotides EX28DRAFT_2525 and EX28DRAFT_2526 are separated by 66 nucleotides EX28DRAFT_2526 and EX28DRAFT_2527 are separated by 60 nucleotides
EX28DRAFT_2523: EX28DRAFT_2523 - Cysteine synthase, at 2,553,852 to 2,554,901
_2523
EX28DRAFT_2524: EX28DRAFT_2524 - HAD-superfamily hydrolase, subfamily IIB, at 2,554,943 to 2,555,761
_2524
EX28DRAFT_2525: EX28DRAFT_2525 - ABC-type uncharacterized transport system, periplasmic component, at 2,555,863 to 2,557,563
_2525
EX28DRAFT_2526: EX28DRAFT_2526 - queuosine biosynthesis protein QueC, at 2,557,630 to 2,558,325
_2526
EX28DRAFT_2527: EX28DRAFT_2527 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 2,558,386 to 2,558,784
_2527
Position (kb)
2555
2556
2557
2558 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2554.900 kb on - strand at 2554.916 kb on + strand at 2554.916 kb on + strand at 2554.917 kb on - strand at 2554.917 kb on - strand at 2555.093 kb on + strand, within EX28DRAFT_2524 at 2555.093 kb on + strand, within EX28DRAFT_2524 at 2555.094 kb on - strand, within EX28DRAFT_2524 at 2555.140 kb on + strand, within EX28DRAFT_2524 at 2555.140 kb on + strand, within EX28DRAFT_2524 at 2555.140 kb on + strand, within EX28DRAFT_2524 at 2555.201 kb on - strand, within EX28DRAFT_2524 at 2555.329 kb on + strand, within EX28DRAFT_2524 at 2555.329 kb on + strand, within EX28DRAFT_2524 at 2555.330 kb on - strand, within EX28DRAFT_2524 at 2555.330 kb on - strand, within EX28DRAFT_2524 at 2555.330 kb on - strand, within EX28DRAFT_2524 at 2555.366 kb on - strand, within EX28DRAFT_2524 at 2555.373 kb on + strand, within EX28DRAFT_2524 at 2555.406 kb on - strand, within EX28DRAFT_2524 at 2555.406 kb on - strand, within EX28DRAFT_2524 at 2555.544 kb on - strand, within EX28DRAFT_2524 at 2555.766 kb on - strand at 2555.787 kb on + strand at 2556.063 kb on - strand, within EX28DRAFT_2525 at 2556.182 kb on + strand, within EX28DRAFT_2525 at 2556.616 kb on + strand, within EX28DRAFT_2525 at 2556.616 kb on + strand, within EX28DRAFT_2525 at 2556.617 kb on - strand, within EX28DRAFT_2525 at 2556.893 kb on - strand, within EX28DRAFT_2525 at 2556.945 kb on + strand, within EX28DRAFT_2525 at 2556.951 kb on + strand, within EX28DRAFT_2525 at 2557.059 kb on - strand, within EX28DRAFT_2525 at 2557.067 kb on + strand, within EX28DRAFT_2525 at 2557.067 kb on + strand, within EX28DRAFT_2525 at 2557.067 kb on + strand, within EX28DRAFT_2525 at 2557.068 kb on - strand, within EX28DRAFT_2525 at 2557.096 kb on + strand, within EX28DRAFT_2525 at 2557.144 kb on + strand, within EX28DRAFT_2525 at 2557.144 kb on + strand, within EX28DRAFT_2525 at 2557.144 kb on + strand, within EX28DRAFT_2525 at 2557.144 kb on + strand, within EX28DRAFT_2525 at 2557.250 kb on + strand, within EX28DRAFT_2525 at 2557.250 kb on + strand, within EX28DRAFT_2525 at 2557.272 kb on + strand, within EX28DRAFT_2525 at 2557.272 kb on + strand, within EX28DRAFT_2525 at 2557.273 kb on - strand, within EX28DRAFT_2525 at 2557.389 kb on + strand, within EX28DRAFT_2525 at 2557.460 kb on - strand at 2557.460 kb on - strand at 2557.497 kb on + strand at 2557.497 kb on + strand at 2557.497 kb on + strand at 2557.498 kb on - strand at 2557.498 kb on - strand at 2557.499 kb on + strand at 2557.598 kb on + strand at 2557.613 kb on - strand at 2557.674 kb on + strand at 2557.675 kb on - strand at 2557.703 kb on - strand, within EX28DRAFT_2526 at 2557.827 kb on - strand, within EX28DRAFT_2526 at 2557.863 kb on + strand, within EX28DRAFT_2526 at 2557.863 kb on + strand, within EX28DRAFT_2526 at 2557.864 kb on - strand, within EX28DRAFT_2526 at 2557.864 kb on - strand, within EX28DRAFT_2526 at 2557.879 kb on + strand, within EX28DRAFT_2526 at 2557.879 kb on + strand, within EX28DRAFT_2526 at 2557.880 kb on - strand, within EX28DRAFT_2526 at 2557.880 kb on - strand, within EX28DRAFT_2526 at 2557.929 kb on + strand, within EX28DRAFT_2526 at 2557.957 kb on + strand, within EX28DRAFT_2526 at 2557.958 kb on - strand, within EX28DRAFT_2526 at 2557.958 kb on - strand, within EX28DRAFT_2526 at 2557.958 kb on - strand, within EX28DRAFT_2526 at 2557.958 kb on - strand, within EX28DRAFT_2526 at 2557.971 kb on - strand, within EX28DRAFT_2526 at 2558.194 kb on + strand, within EX28DRAFT_2526 at 2558.319 kb on + strand at 2558.320 kb on - strand at 2558.323 kb on + strand at 2558.329 kb on + strand at 2558.527 kb on + strand, within EX28DRAFT_2527 at 2558.528 kb on - strand, within EX28DRAFT_2527
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,554,900 - +0.1 2,554,916 + -0.5 2,554,916 + +0.0 2,554,917 - +0.2 2,554,917 - -0.1 2,555,093 + EX28DRAFT_2524 0.18 -0.6 2,555,093 + EX28DRAFT_2524 0.18 +1.4 2,555,094 - EX28DRAFT_2524 0.18 -1.1 2,555,140 + EX28DRAFT_2524 0.24 +0.5 2,555,140 + EX28DRAFT_2524 0.24 +0.1 2,555,140 + EX28DRAFT_2524 0.24 +0.2 2,555,201 - EX28DRAFT_2524 0.32 -0.1 2,555,329 + EX28DRAFT_2524 0.47 +0.3 2,555,329 + EX28DRAFT_2524 0.47 -0.6 2,555,330 - EX28DRAFT_2524 0.47 +0.2 2,555,330 - EX28DRAFT_2524 0.47 +0.7 2,555,330 - EX28DRAFT_2524 0.47 +0.6 2,555,366 - EX28DRAFT_2524 0.52 +0.8 2,555,373 + EX28DRAFT_2524 0.53 -0.5 2,555,406 - EX28DRAFT_2524 0.57 -0.4 2,555,406 - EX28DRAFT_2524 0.57 -0.8 2,555,544 - EX28DRAFT_2524 0.73 +0.8 2,555,766 - +0.6 2,555,787 + +1.0 2,556,063 - EX28DRAFT_2525 0.12 +1.3 2,556,182 + EX28DRAFT_2525 0.19 +0.3 2,556,616 + EX28DRAFT_2525 0.44 +0.1 2,556,616 + EX28DRAFT_2525 0.44 -0.1 2,556,617 - EX28DRAFT_2525 0.44 +0.3 2,556,893 - EX28DRAFT_2525 0.61 -1.1 2,556,945 + EX28DRAFT_2525 0.64 -1.0 2,556,951 + EX28DRAFT_2525 0.64 -0.4 2,557,059 - EX28DRAFT_2525 0.70 -0.7 2,557,067 + EX28DRAFT_2525 0.71 +0.2 2,557,067 + EX28DRAFT_2525 0.71 +0.2 2,557,067 + EX28DRAFT_2525 0.71 -0.4 2,557,068 - EX28DRAFT_2525 0.71 +0.3 2,557,096 + EX28DRAFT_2525 0.72 -0.2 2,557,144 + EX28DRAFT_2525 0.75 +0.8 2,557,144 + EX28DRAFT_2525 0.75 +0.2 2,557,144 + EX28DRAFT_2525 0.75 +1.8 2,557,144 + EX28DRAFT_2525 0.75 -1.2 2,557,250 + EX28DRAFT_2525 0.82 -0.2 2,557,250 + EX28DRAFT_2525 0.82 +0.2 2,557,272 + EX28DRAFT_2525 0.83 -1.0 2,557,272 + EX28DRAFT_2525 0.83 -1.0 2,557,273 - EX28DRAFT_2525 0.83 +0.1 2,557,389 + EX28DRAFT_2525 0.90 -0.7 2,557,460 - -0.3 2,557,460 - +0.0 2,557,497 + +1.4 2,557,497 + +1.0 2,557,497 + -0.3 2,557,498 - +0.8 2,557,498 - +0.6 2,557,499 + +0.4 2,557,598 + +0.0 2,557,613 - +0.7 2,557,674 + -0.3 2,557,675 - -0.2 2,557,703 - EX28DRAFT_2526 0.10 +1.3 2,557,827 - EX28DRAFT_2526 0.28 +0.1 2,557,863 + EX28DRAFT_2526 0.33 +0.3 2,557,863 + EX28DRAFT_2526 0.33 +0.6 2,557,864 - EX28DRAFT_2526 0.34 +0.3 2,557,864 - EX28DRAFT_2526 0.34 +0.4 2,557,879 + EX28DRAFT_2526 0.36 +0.4 2,557,879 + EX28DRAFT_2526 0.36 -1.6 2,557,880 - EX28DRAFT_2526 0.36 -1.5 2,557,880 - EX28DRAFT_2526 0.36 +0.5 2,557,929 + EX28DRAFT_2526 0.43 -0.3 2,557,957 + EX28DRAFT_2526 0.47 -0.4 2,557,958 - EX28DRAFT_2526 0.47 +0.4 2,557,958 - EX28DRAFT_2526 0.47 -0.0 2,557,958 - EX28DRAFT_2526 0.47 -0.1 2,557,958 - EX28DRAFT_2526 0.47 -0.8 2,557,971 - EX28DRAFT_2526 0.49 -1.8 2,558,194 + EX28DRAFT_2526 0.81 +0.2 2,558,319 + +0.1 2,558,320 - -0.5 2,558,323 + -0.4 2,558,329 + +0.7 2,558,527 + EX28DRAFT_2527 0.35 +0.2 2,558,528 - EX28DRAFT_2527 0.36 -0.3
Or see this region's nucleotide sequence