Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2498 and EX28DRAFT_2499 are separated by 205 nucleotides EX28DRAFT_2499 and EX28DRAFT_2500 are separated by 117 nucleotides EX28DRAFT_2500 and EX28DRAFT_2501 overlap by 29 nucleotides
EX28DRAFT_2498: EX28DRAFT_2498 - Haemolysin expression modulating protein, at 2,531,003 to 2,531,221
_2498
EX28DRAFT_2499: EX28DRAFT_2499 - Acetyltransferase (isoleucine patch superfamily), at 2,531,427 to 2,531,978
_2499
EX28DRAFT_2500: EX28DRAFT_2500 - Inner membrane protein YlaC, at 2,532,096 to 2,532,563
_2500
EX28DRAFT_2501: EX28DRAFT_2501 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,532,535 to 2,533,995
_2501
Position (kb)
2532
2533 Strain fitness (log2 ratio)
-2
-1
0
1 at 2531.132 kb on + strand, within EX28DRAFT_2498 at 2531.194 kb on + strand, within EX28DRAFT_2498 at 2531.263 kb on + strand at 2531.267 kb on + strand at 2531.267 kb on + strand at 2531.267 kb on + strand at 2531.268 kb on - strand at 2531.272 kb on - strand at 2531.521 kb on + strand, within EX28DRAFT_2499 at 2531.522 kb on - strand, within EX28DRAFT_2499 at 2531.522 kb on - strand, within EX28DRAFT_2499 at 2531.530 kb on - strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.608 kb on - strand, within EX28DRAFT_2499 at 2531.608 kb on - strand, within EX28DRAFT_2499 at 2531.609 kb on + strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.611 kb on + strand, within EX28DRAFT_2499 at 2531.612 kb on - strand, within EX28DRAFT_2499 at 2531.612 kb on - strand, within EX28DRAFT_2499 at 2531.635 kb on - strand, within EX28DRAFT_2499 at 2531.643 kb on - strand, within EX28DRAFT_2499 at 2531.643 kb on - strand, within EX28DRAFT_2499 at 2531.650 kb on - strand, within EX28DRAFT_2499 at 2531.747 kb on + strand, within EX28DRAFT_2499 at 2531.747 kb on + strand, within EX28DRAFT_2499 at 2531.751 kb on + strand, within EX28DRAFT_2499 at 2531.751 kb on + strand, within EX28DRAFT_2499 at 2531.752 kb on - strand, within EX28DRAFT_2499 at 2532.023 kb on + strand at 2532.094 kb on + strand at 2532.141 kb on - strand at 2532.176 kb on + strand, within EX28DRAFT_2500 at 2532.182 kb on + strand, within EX28DRAFT_2500 at 2532.182 kb on + strand, within EX28DRAFT_2500 at 2532.183 kb on - strand, within EX28DRAFT_2500 at 2532.183 kb on - strand, within EX28DRAFT_2500 at 2532.222 kb on + strand, within EX28DRAFT_2500 at 2532.222 kb on + strand, within EX28DRAFT_2500 at 2532.223 kb on - strand, within EX28DRAFT_2500 at 2532.362 kb on + strand, within EX28DRAFT_2500 at 2532.417 kb on + strand, within EX28DRAFT_2500 at 2532.446 kb on + strand, within EX28DRAFT_2500 at 2532.525 kb on + strand at 2532.526 kb on - strand at 2532.562 kb on - strand at 2532.562 kb on - strand at 2532.566 kb on - strand at 2532.612 kb on + strand at 2532.613 kb on - strand at 2532.626 kb on - strand at 2532.626 kb on - strand at 2532.662 kb on + strand at 2532.663 kb on - strand at 2532.875 kb on + strand, within EX28DRAFT_2501 at 2533.041 kb on - strand, within EX28DRAFT_2501 at 2533.041 kb on - strand, within EX28DRAFT_2501 at 2533.224 kb on + strand, within EX28DRAFT_2501 at 2533.283 kb on - strand, within EX28DRAFT_2501 at 2533.283 kb on - strand, within EX28DRAFT_2501 at 2533.315 kb on - strand, within EX28DRAFT_2501 at 2533.433 kb on - strand, within EX28DRAFT_2501 at 2533.529 kb on - strand, within EX28DRAFT_2501
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,531,132 + EX28DRAFT_2498 0.59 +0.1 2,531,194 + EX28DRAFT_2498 0.87 -0.8 2,531,263 + +0.3 2,531,267 + -0.0 2,531,267 + -0.5 2,531,267 + +1.3 2,531,268 - +0.2 2,531,272 - +0.7 2,531,521 + EX28DRAFT_2499 0.17 -0.2 2,531,522 - EX28DRAFT_2499 0.17 +1.5 2,531,522 - EX28DRAFT_2499 0.17 -0.0 2,531,530 - EX28DRAFT_2499 0.19 +1.2 2,531,607 + EX28DRAFT_2499 0.33 -0.5 2,531,607 + EX28DRAFT_2499 0.33 -0.8 2,531,607 + EX28DRAFT_2499 0.33 +1.0 2,531,607 + EX28DRAFT_2499 0.33 +0.1 2,531,608 - EX28DRAFT_2499 0.33 +1.5 2,531,608 - EX28DRAFT_2499 0.33 +0.9 2,531,609 + EX28DRAFT_2499 0.33 -0.1 2,531,610 - EX28DRAFT_2499 0.33 -0.4 2,531,610 - EX28DRAFT_2499 0.33 -0.1 2,531,610 - EX28DRAFT_2499 0.33 +0.4 2,531,610 - EX28DRAFT_2499 0.33 +0.0 2,531,611 + EX28DRAFT_2499 0.33 -1.4 2,531,612 - EX28DRAFT_2499 0.34 +0.6 2,531,612 - EX28DRAFT_2499 0.34 -0.7 2,531,635 - EX28DRAFT_2499 0.38 +0.2 2,531,643 - EX28DRAFT_2499 0.39 -0.0 2,531,643 - EX28DRAFT_2499 0.39 -1.2 2,531,650 - EX28DRAFT_2499 0.40 +0.2 2,531,747 + EX28DRAFT_2499 0.58 +1.0 2,531,747 + EX28DRAFT_2499 0.58 +0.0 2,531,751 + EX28DRAFT_2499 0.59 -0.5 2,531,751 + EX28DRAFT_2499 0.59 +0.0 2,531,752 - EX28DRAFT_2499 0.59 -0.4 2,532,023 + +1.1 2,532,094 + -0.5 2,532,141 - +1.0 2,532,176 + EX28DRAFT_2500 0.17 -0.1 2,532,182 + EX28DRAFT_2500 0.18 +0.4 2,532,182 + EX28DRAFT_2500 0.18 +0.5 2,532,183 - EX28DRAFT_2500 0.19 +0.5 2,532,183 - EX28DRAFT_2500 0.19 -0.2 2,532,222 + EX28DRAFT_2500 0.27 -0.1 2,532,222 + EX28DRAFT_2500 0.27 -0.4 2,532,223 - EX28DRAFT_2500 0.27 -0.2 2,532,362 + EX28DRAFT_2500 0.57 +0.1 2,532,417 + EX28DRAFT_2500 0.69 -0.1 2,532,446 + EX28DRAFT_2500 0.75 +0.7 2,532,525 + +0.5 2,532,526 - +0.1 2,532,562 - -0.3 2,532,562 - -0.1 2,532,566 - +0.1 2,532,612 + -0.4 2,532,613 - -0.4 2,532,626 - -0.6 2,532,626 - +0.7 2,532,662 + +0.1 2,532,663 - +0.3 2,532,875 + EX28DRAFT_2501 0.23 -0.0 2,533,041 - EX28DRAFT_2501 0.35 -0.4 2,533,041 - EX28DRAFT_2501 0.35 -0.5 2,533,224 + EX28DRAFT_2501 0.47 +0.0 2,533,283 - EX28DRAFT_2501 0.51 +0.3 2,533,283 - EX28DRAFT_2501 0.51 -2.0 2,533,315 - EX28DRAFT_2501 0.53 +0.5 2,533,433 - EX28DRAFT_2501 0.61 +0.2 2,533,529 - EX28DRAFT_2501 0.68 +0.1
Or see this region's nucleotide sequence