Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2445 and EX28DRAFT_2446 are separated by 14 nucleotides EX28DRAFT_2446 and EX28DRAFT_2447 are separated by 34 nucleotides EX28DRAFT_2447 and EX28DRAFT_2448 are separated by 68 nucleotides EX28DRAFT_2448 and EX28DRAFT_2449 are separated by 310 nucleotides
EX28DRAFT_2445: EX28DRAFT_2445 - P pilus assembly protein, porin PapC, at 2,475,184 to 2,477,745
_2445
EX28DRAFT_2446: EX28DRAFT_2446 - P pilus assembly protein, chaperone PapD, at 2,477,760 to 2,478,452
_2446
EX28DRAFT_2447: EX28DRAFT_2447 - P pilus assembly protein, pilin FimA, at 2,478,487 to 2,479,032
_2447
EX28DRAFT_2448: EX28DRAFT_2448 - P pilus assembly protein, pilin FimA, at 2,479,101 to 2,479,664
_2448
EX28DRAFT_2449: EX28DRAFT_2449 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 2,479,975 to 2,480,841
_2449
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2477.929 kb on + strand, within EX28DRAFT_2446 at 2477.930 kb on - strand, within EX28DRAFT_2446 at 2477.932 kb on + strand, within EX28DRAFT_2446 at 2477.932 kb on + strand, within EX28DRAFT_2446 at 2477.933 kb on - strand, within EX28DRAFT_2446 at 2477.933 kb on - strand, within EX28DRAFT_2446 at 2478.128 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.177 kb on - strand, within EX28DRAFT_2446 at 2478.177 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.438 kb on - strand at 2478.468 kb on - strand at 2478.495 kb on - strand at 2478.505 kb on - strand at 2478.552 kb on + strand, within EX28DRAFT_2447 at 2478.808 kb on - strand, within EX28DRAFT_2447 at 2478.808 kb on - strand, within EX28DRAFT_2447 at 2478.808 kb on - strand, within EX28DRAFT_2447 at 2478.885 kb on + strand, within EX28DRAFT_2447 at 2478.886 kb on - strand, within EX28DRAFT_2447 at 2478.886 kb on - strand, within EX28DRAFT_2447 at 2479.013 kb on - strand at 2479.102 kb on + strand at 2479.102 kb on + strand at 2479.103 kb on - strand at 2479.103 kb on - strand at 2479.108 kb on + strand at 2479.109 kb on - strand at 2479.109 kb on - strand at 2479.109 kb on - strand at 2479.116 kb on + strand at 2479.175 kb on - strand, within EX28DRAFT_2448 at 2479.431 kb on - strand, within EX28DRAFT_2448 at 2479.433 kb on + strand, within EX28DRAFT_2448 at 2479.433 kb on + strand, within EX28DRAFT_2448 at 2479.434 kb on - strand, within EX28DRAFT_2448 at 2479.458 kb on - strand, within EX28DRAFT_2448 at 2479.475 kb on - strand, within EX28DRAFT_2448 at 2479.512 kb on - strand, within EX28DRAFT_2448 at 2479.516 kb on - strand, within EX28DRAFT_2448 at 2479.516 kb on - strand, within EX28DRAFT_2448 at 2479.516 kb on - strand, within EX28DRAFT_2448 at 2479.548 kb on - strand, within EX28DRAFT_2448 at 2479.548 kb on - strand, within EX28DRAFT_2448 at 2479.548 kb on - strand, within EX28DRAFT_2448 at 2479.554 kb on + strand, within EX28DRAFT_2448 at 2479.554 kb on + strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.555 kb on - strand, within EX28DRAFT_2448 at 2479.628 kb on + strand at 2479.628 kb on + strand at 2479.629 kb on - strand at 2479.629 kb on - strand at 2479.629 kb on - strand at 2479.629 kb on - strand at 2479.634 kb on + strand at 2479.635 kb on - strand at 2479.635 kb on - strand at 2479.640 kb on + strand at 2479.640 kb on + strand at 2479.640 kb on + strand at 2479.640 kb on + strand at 2479.641 kb on - strand at 2479.641 kb on - strand at 2479.641 kb on - strand at 2479.668 kb on + strand at 2479.669 kb on - strand at 2479.669 kb on - strand at 2479.669 kb on - strand at 2479.676 kb on + strand at 2479.684 kb on - strand at 2479.684 kb on - strand at 2479.687 kb on + strand at 2479.687 kb on + strand at 2479.688 kb on - strand at 2479.688 kb on - strand at 2479.688 kb on - strand at 2479.714 kb on - strand at 2479.720 kb on + strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.721 kb on - strand at 2479.734 kb on + strand at 2479.746 kb on + strand at 2479.747 kb on - strand at 2479.765 kb on + strand at 2479.766 kb on - strand at 2479.784 kb on + strand at 2479.785 kb on - strand at 2479.785 kb on - strand at 2479.788 kb on + strand at 2479.788 kb on + strand at 2479.788 kb on + strand at 2479.788 kb on + strand at 2479.789 kb on - strand at 2479.824 kb on + strand at 2479.824 kb on + strand at 2479.834 kb on + strand at 2479.835 kb on - strand at 2479.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,477,929 + EX28DRAFT_2446 0.24 +0.3 2,477,930 - EX28DRAFT_2446 0.25 +0.4 2,477,932 + EX28DRAFT_2446 0.25 -0.1 2,477,932 + EX28DRAFT_2446 0.25 +1.4 2,477,933 - EX28DRAFT_2446 0.25 -1.7 2,477,933 - EX28DRAFT_2446 0.25 -1.3 2,478,128 - EX28DRAFT_2446 0.53 +0.2 2,478,174 - EX28DRAFT_2446 0.60 +0.9 2,478,174 - EX28DRAFT_2446 0.60 -0.1 2,478,174 - EX28DRAFT_2446 0.60 -1.1 2,478,177 - EX28DRAFT_2446 0.60 -0.6 2,478,177 - EX28DRAFT_2446 0.60 +1.3 2,478,280 - EX28DRAFT_2446 0.75 -1.7 2,478,280 - EX28DRAFT_2446 0.75 +0.1 2,478,280 - EX28DRAFT_2446 0.75 +0.6 2,478,438 - -0.2 2,478,468 - +0.1 2,478,495 - +0.0 2,478,505 - -0.9 2,478,552 + EX28DRAFT_2447 0.12 +0.1 2,478,808 - EX28DRAFT_2447 0.59 -2.1 2,478,808 - EX28DRAFT_2447 0.59 -1.7 2,478,808 - EX28DRAFT_2447 0.59 -0.7 2,478,885 + EX28DRAFT_2447 0.73 -0.4 2,478,886 - EX28DRAFT_2447 0.73 +0.3 2,478,886 - EX28DRAFT_2447 0.73 -2.8 2,479,013 - +0.2 2,479,102 + -0.8 2,479,102 + -0.4 2,479,103 - -0.0 2,479,103 - -0.3 2,479,108 + -0.0 2,479,109 - -1.4 2,479,109 - +0.4 2,479,109 - -1.0 2,479,116 + -0.0 2,479,175 - EX28DRAFT_2448 0.13 -0.3 2,479,431 - EX28DRAFT_2448 0.59 +0.3 2,479,433 + EX28DRAFT_2448 0.59 -0.4 2,479,433 + EX28DRAFT_2448 0.59 +0.6 2,479,434 - EX28DRAFT_2448 0.59 -0.3 2,479,458 - EX28DRAFT_2448 0.63 -0.4 2,479,475 - EX28DRAFT_2448 0.66 +0.6 2,479,512 - EX28DRAFT_2448 0.73 -3.6 2,479,516 - EX28DRAFT_2448 0.74 -0.1 2,479,516 - EX28DRAFT_2448 0.74 -0.1 2,479,516 - EX28DRAFT_2448 0.74 +0.2 2,479,548 - EX28DRAFT_2448 0.79 -0.1 2,479,548 - EX28DRAFT_2448 0.79 +0.0 2,479,548 - EX28DRAFT_2448 0.79 -0.1 2,479,554 + EX28DRAFT_2448 0.80 +0.4 2,479,554 + EX28DRAFT_2448 0.80 -0.0 2,479,555 - EX28DRAFT_2448 0.80 -1.0 2,479,555 - EX28DRAFT_2448 0.80 -0.6 2,479,555 - EX28DRAFT_2448 0.80 -0.0 2,479,555 - EX28DRAFT_2448 0.80 -0.6 2,479,628 + -0.1 2,479,628 + -1.8 2,479,629 - -1.0 2,479,629 - -1.1 2,479,629 - -0.0 2,479,629 - -0.3 2,479,634 + +1.3 2,479,635 - +0.0 2,479,635 - +0.1 2,479,640 + -1.1 2,479,640 + -1.2 2,479,640 + +1.3 2,479,640 + -1.5 2,479,641 - +0.1 2,479,641 - -0.1 2,479,641 - -0.6 2,479,668 + -0.2 2,479,669 - +0.8 2,479,669 - +0.4 2,479,669 - +0.1 2,479,676 + -0.4 2,479,684 - -0.4 2,479,684 - -0.3 2,479,687 + +0.1 2,479,687 + +0.7 2,479,688 - +0.5 2,479,688 - +0.4 2,479,688 - -0.0 2,479,714 - +0.2 2,479,720 + +0.2 2,479,721 - -0.4 2,479,721 - +0.3 2,479,721 - +1.7 2,479,721 - -0.2 2,479,721 - -0.7 2,479,734 + +0.1 2,479,746 + -1.3 2,479,747 - +1.4 2,479,765 + -0.0 2,479,766 - +0.3 2,479,784 + -0.6 2,479,785 - -0.4 2,479,785 - +2.3 2,479,788 + -0.3 2,479,788 + -0.3 2,479,788 + -0.5 2,479,788 + +0.1 2,479,789 - -0.4 2,479,824 + +0.5 2,479,824 + -0.6 2,479,834 + +0.3 2,479,835 - -0.6 2,479,927 + -2.4
Or see this region's nucleotide sequence