Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2397

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2396 and EX28DRAFT_2397 overlap by 1 nucleotidesEX28DRAFT_2397 and EX28DRAFT_2398 overlap by 8 nucleotidesEX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotides EX28DRAFT_2396: EX28DRAFT_2396 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,422,528 to 2,423,541 _2396 EX28DRAFT_2397: EX28DRAFT_2397 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,423,541 to 2,424,374 _2397 EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203 _2398 EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894 _2399 Position (kb) 2423 2424 2425Strain fitness (log2 ratio) -2 -1 0 1at 2422.679 kb on - strand, within EX28DRAFT_2396at 2422.680 kb on - strand, within EX28DRAFT_2396at 2423.058 kb on + strand, within EX28DRAFT_2396at 2423.095 kb on - strand, within EX28DRAFT_2396at 2423.171 kb on - strand, within EX28DRAFT_2396at 2423.173 kb on + strand, within EX28DRAFT_2396at 2423.236 kb on + strand, within EX28DRAFT_2396at 2423.237 kb on - strand, within EX28DRAFT_2396at 2423.274 kb on - strand, within EX28DRAFT_2396at 2423.551 kb on - strandat 2423.561 kb on - strandat 2424.048 kb on + strand, within EX28DRAFT_2397at 2424.104 kb on + strand, within EX28DRAFT_2397at 2424.136 kb on + strand, within EX28DRAFT_2397at 2424.137 kb on - strand, within EX28DRAFT_2397at 2424.137 kb on - strand, within EX28DRAFT_2397at 2424.248 kb on + strand, within EX28DRAFT_2397at 2424.978 kb on - strand, within EX28DRAFT_2398at 2424.978 kb on - strand, within EX28DRAFT_2398at 2425.034 kb on - strand, within EX28DRAFT_2398at 2425.095 kb on + strand, within EX28DRAFT_2398

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,422,679 - EX28DRAFT_2396 0.15 -2.2
2,422,680 - EX28DRAFT_2396 0.15 -0.9
2,423,058 + EX28DRAFT_2396 0.52 +1.4
2,423,095 - EX28DRAFT_2396 0.56 +0.5
2,423,171 - EX28DRAFT_2396 0.63 +0.6
2,423,173 + EX28DRAFT_2396 0.64 -0.6
2,423,236 + EX28DRAFT_2396 0.70 -2.0
2,423,237 - EX28DRAFT_2396 0.70 -1.1
2,423,274 - EX28DRAFT_2396 0.74 -1.4
2,423,551 - +0.1
2,423,561 - +0.0
2,424,048 + EX28DRAFT_2397 0.61 +0.9
2,424,104 + EX28DRAFT_2397 0.68 +0.2
2,424,136 + EX28DRAFT_2397 0.71 +0.1
2,424,137 - EX28DRAFT_2397 0.71 +0.0
2,424,137 - EX28DRAFT_2397 0.71 +0.6
2,424,248 + EX28DRAFT_2397 0.85 -1.5
2,424,978 - EX28DRAFT_2398 0.73 -0.4
2,424,978 - EX28DRAFT_2398 0.73 -0.2
2,425,034 - EX28DRAFT_2398 0.80 -0.2
2,425,095 + EX28DRAFT_2398 0.87 +0.1

Or see this region's nucleotide sequence