Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2396 and EX28DRAFT_2397 overlap by 1 nucleotides EX28DRAFT_2397 and EX28DRAFT_2398 overlap by 8 nucleotides EX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotides
EX28DRAFT_2396: EX28DRAFT_2396 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,422,528 to 2,423,541
_2396
EX28DRAFT_2397: EX28DRAFT_2397 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,423,541 to 2,424,374
_2397
EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203
_2398
EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894
_2399
Position (kb)
2423
2424
2425 Strain fitness (log2 ratio)
-2
-1
0
1 at 2422.679 kb on - strand, within EX28DRAFT_2396 at 2422.680 kb on - strand, within EX28DRAFT_2396 at 2423.058 kb on + strand, within EX28DRAFT_2396 at 2423.095 kb on - strand, within EX28DRAFT_2396 at 2423.171 kb on - strand, within EX28DRAFT_2396 at 2423.173 kb on + strand, within EX28DRAFT_2396 at 2423.236 kb on + strand, within EX28DRAFT_2396 at 2423.237 kb on - strand, within EX28DRAFT_2396 at 2423.274 kb on - strand, within EX28DRAFT_2396 at 2423.551 kb on - strand at 2423.561 kb on - strand at 2424.048 kb on + strand, within EX28DRAFT_2397 at 2424.104 kb on + strand, within EX28DRAFT_2397 at 2424.136 kb on + strand, within EX28DRAFT_2397 at 2424.137 kb on - strand, within EX28DRAFT_2397 at 2424.137 kb on - strand, within EX28DRAFT_2397 at 2424.248 kb on + strand, within EX28DRAFT_2397 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2425.034 kb on - strand, within EX28DRAFT_2398 at 2425.095 kb on + strand, within EX28DRAFT_2398
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,422,679 - EX28DRAFT_2396 0.15 -2.2 2,422,680 - EX28DRAFT_2396 0.15 -0.9 2,423,058 + EX28DRAFT_2396 0.52 +1.4 2,423,095 - EX28DRAFT_2396 0.56 +0.5 2,423,171 - EX28DRAFT_2396 0.63 +0.6 2,423,173 + EX28DRAFT_2396 0.64 -0.6 2,423,236 + EX28DRAFT_2396 0.70 -2.0 2,423,237 - EX28DRAFT_2396 0.70 -1.1 2,423,274 - EX28DRAFT_2396 0.74 -1.4 2,423,551 - +0.1 2,423,561 - +0.0 2,424,048 + EX28DRAFT_2397 0.61 +0.9 2,424,104 + EX28DRAFT_2397 0.68 +0.2 2,424,136 + EX28DRAFT_2397 0.71 +0.1 2,424,137 - EX28DRAFT_2397 0.71 +0.0 2,424,137 - EX28DRAFT_2397 0.71 +0.6 2,424,248 + EX28DRAFT_2397 0.85 -1.5 2,424,978 - EX28DRAFT_2398 0.73 -0.4 2,424,978 - EX28DRAFT_2398 0.73 -0.2 2,425,034 - EX28DRAFT_2398 0.80 -0.2 2,425,095 + EX28DRAFT_2398 0.87 +0.1
Or see this region's nucleotide sequence