Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2338 and EX28DRAFT_2339 are separated by 166 nucleotides EX28DRAFT_2339 and EX28DRAFT_2340 overlap by 365 nucleotides EX28DRAFT_2340 and EX28DRAFT_2341 are separated by 190 nucleotides EX28DRAFT_2341 and EX28DRAFT_2342 are separated by 394 nucleotides
EX28DRAFT_2338: EX28DRAFT_2338 - protein CrcB, at 2,362,312 to 2,362,695
_2338
EX28DRAFT_2339: EX28DRAFT_2339 - RNA, at 2,362,862 to 2,363,279
_2339
EX28DRAFT_2340: EX28DRAFT_2340 - Cold shock proteins, at 2,362,915 to 2,363,124
_2340
EX28DRAFT_2341: EX28DRAFT_2341 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 2,363,315 to 2,363,932
_2341
EX28DRAFT_2342: EX28DRAFT_2342 - c4-dicarboxylate anaerobic carrier family protein, at 2,364,327 to 2,365,694
_2342
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2362.317 kb on - strand at 2362.317 kb on - strand at 2362.322 kb on + strand at 2362.339 kb on - strand at 2362.380 kb on + strand, within EX28DRAFT_2338 at 2362.414 kb on - strand, within EX28DRAFT_2338 at 2362.617 kb on + strand, within EX28DRAFT_2338 at 2362.629 kb on + strand, within EX28DRAFT_2338 at 2362.629 kb on + strand, within EX28DRAFT_2338 at 2362.629 kb on + strand, within EX28DRAFT_2338 at 2362.839 kb on + strand at 2362.839 kb on + strand at 2363.118 kb on + strand at 2363.138 kb on - strand at 2363.138 kb on - strand at 2363.176 kb on + strand at 2363.265 kb on + strand at 2363.289 kb on - strand at 2363.302 kb on - strand at 2363.343 kb on + strand at 2363.362 kb on - strand at 2363.362 kb on - strand at 2363.362 kb on - strand at 2363.362 kb on - strand at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.377 kb on - strand, within EX28DRAFT_2341 at 2363.445 kb on + strand, within EX28DRAFT_2341 at 2363.541 kb on + strand, within EX28DRAFT_2341 at 2363.566 kb on + strand, within EX28DRAFT_2341 at 2363.592 kb on + strand, within EX28DRAFT_2341 at 2363.593 kb on - strand, within EX28DRAFT_2341 at 2363.593 kb on - strand, within EX28DRAFT_2341 at 2363.665 kb on - strand, within EX28DRAFT_2341 at 2363.665 kb on - strand, within EX28DRAFT_2341 at 2363.665 kb on - strand, within EX28DRAFT_2341 at 2363.712 kb on - strand, within EX28DRAFT_2341 at 2363.724 kb on + strand, within EX28DRAFT_2341 at 2363.724 kb on + strand, within EX28DRAFT_2341 at 2363.724 kb on + strand, within EX28DRAFT_2341 at 2363.733 kb on + strand, within EX28DRAFT_2341 at 2363.838 kb on - strand, within EX28DRAFT_2341 at 2363.878 kb on + strand at 2363.908 kb on + strand at 2363.937 kb on + strand at 2363.938 kb on - strand at 2363.978 kb on + strand at 2364.057 kb on - strand at 2364.167 kb on + strand at 2364.167 kb on + strand at 2364.168 kb on - strand at 2364.173 kb on + strand at 2364.173 kb on + strand at 2364.174 kb on - strand at 2364.174 kb on - strand at 2364.230 kb on + strand at 2364.302 kb on + strand at 2364.332 kb on + strand at 2364.332 kb on + strand at 2364.332 kb on + strand at 2364.333 kb on - strand at 2364.350 kb on + strand at 2364.384 kb on + strand at 2364.385 kb on - strand at 2364.399 kb on + strand at 2364.415 kb on + strand at 2364.415 kb on + strand at 2364.415 kb on + strand at 2364.415 kb on + strand at 2364.416 kb on - strand at 2364.416 kb on - strand at 2364.418 kb on + strand at 2364.418 kb on + strand at 2364.475 kb on + strand, within EX28DRAFT_2342 at 2364.509 kb on + strand, within EX28DRAFT_2342 at 2364.526 kb on - strand, within EX28DRAFT_2342 at 2364.526 kb on - strand, within EX28DRAFT_2342 at 2364.567 kb on - strand, within EX28DRAFT_2342 at 2364.600 kb on + strand, within EX28DRAFT_2342 at 2364.601 kb on - strand, within EX28DRAFT_2342 at 2364.601 kb on - strand, within EX28DRAFT_2342 at 2364.660 kb on + strand, within EX28DRAFT_2342 at 2364.661 kb on - strand, within EX28DRAFT_2342
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,362,317 - +0.1 2,362,317 - +0.2 2,362,322 + -1.2 2,362,339 - +0.0 2,362,380 + EX28DRAFT_2338 0.18 +2.2 2,362,414 - EX28DRAFT_2338 0.27 +0.2 2,362,617 + EX28DRAFT_2338 0.79 -0.4 2,362,629 + EX28DRAFT_2338 0.83 +0.2 2,362,629 + EX28DRAFT_2338 0.83 +0.2 2,362,629 + EX28DRAFT_2338 0.83 +0.0 2,362,839 + -0.6 2,362,839 + +0.3 2,363,118 + +1.0 2,363,138 - +0.6 2,363,138 - +1.5 2,363,176 + +0.1 2,363,265 + -0.4 2,363,289 - +0.0 2,363,302 - -0.2 2,363,343 + +0.3 2,363,362 - -0.0 2,363,362 - +0.1 2,363,362 - +1.3 2,363,362 - +0.3 2,363,377 - EX28DRAFT_2341 0.10 +0.2 2,363,377 - EX28DRAFT_2341 0.10 -0.0 2,363,377 - EX28DRAFT_2341 0.10 -0.6 2,363,377 - EX28DRAFT_2341 0.10 +0.3 2,363,445 + EX28DRAFT_2341 0.21 +1.8 2,363,541 + EX28DRAFT_2341 0.37 -0.8 2,363,566 + EX28DRAFT_2341 0.41 -1.0 2,363,592 + EX28DRAFT_2341 0.45 +0.2 2,363,593 - EX28DRAFT_2341 0.45 +0.0 2,363,593 - EX28DRAFT_2341 0.45 +0.3 2,363,665 - EX28DRAFT_2341 0.57 -0.2 2,363,665 - EX28DRAFT_2341 0.57 -0.2 2,363,665 - EX28DRAFT_2341 0.57 -0.3 2,363,712 - EX28DRAFT_2341 0.64 -0.5 2,363,724 + EX28DRAFT_2341 0.66 +0.2 2,363,724 + EX28DRAFT_2341 0.66 -0.7 2,363,724 + EX28DRAFT_2341 0.66 -0.7 2,363,733 + EX28DRAFT_2341 0.68 +0.1 2,363,838 - EX28DRAFT_2341 0.85 -0.5 2,363,878 + -0.6 2,363,908 + -0.4 2,363,937 + +0.0 2,363,938 - +0.0 2,363,978 + +0.1 2,364,057 - -0.4 2,364,167 + +0.4 2,364,167 + +0.6 2,364,168 - -0.3 2,364,173 + +0.4 2,364,173 + -0.6 2,364,174 - +0.1 2,364,174 - +0.5 2,364,230 + +0.7 2,364,302 + -0.4 2,364,332 + -0.8 2,364,332 + -0.9 2,364,332 + +0.3 2,364,333 - +0.2 2,364,350 + -0.6 2,364,384 + +0.2 2,364,385 - +0.4 2,364,399 + +0.1 2,364,415 + +0.3 2,364,415 + -0.0 2,364,415 + -1.2 2,364,415 + +0.2 2,364,416 - +0.4 2,364,416 - -2.3 2,364,418 + +0.3 2,364,418 + +0.2 2,364,475 + EX28DRAFT_2342 0.11 -0.3 2,364,509 + EX28DRAFT_2342 0.13 -0.5 2,364,526 - EX28DRAFT_2342 0.15 +0.5 2,364,526 - EX28DRAFT_2342 0.15 +0.3 2,364,567 - EX28DRAFT_2342 0.18 -0.2 2,364,600 + EX28DRAFT_2342 0.20 +0.5 2,364,601 - EX28DRAFT_2342 0.20 -1.4 2,364,601 - EX28DRAFT_2342 0.20 -0.3 2,364,660 + EX28DRAFT_2342 0.24 +0.3 2,364,661 - EX28DRAFT_2342 0.24 -0.8
Or see this region's nucleotide sequence