Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2320

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2318 and EX28DRAFT_2319 overlap by 1 nucleotidesEX28DRAFT_2319 and EX28DRAFT_2320 are separated by 120 nucleotidesEX28DRAFT_2320 and EX28DRAFT_2321 are separated by 54 nucleotidesEX28DRAFT_2321 and EX28DRAFT_2322 are separated by 62 nucleotides EX28DRAFT_2318: EX28DRAFT_2318 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 2,342,870 to 2,343,544 _2318 EX28DRAFT_2319: EX28DRAFT_2319 - ABC-type polar amino acid transport system, ATPase component, at 2,343,544 to 2,344,269 _2319 EX28DRAFT_2320: EX28DRAFT_2320 - Inosine-uridine nucleoside N-ribohydrolase, at 2,344,390 to 2,345,331 _2320 EX28DRAFT_2321: EX28DRAFT_2321 - Protein of unknown function (DUF1451), at 2,345,386 to 2,345,871 _2321 EX28DRAFT_2322: EX28DRAFT_2322 - leucyl-tRNA synthetase (EC 6.1.1.4), at 2,345,934 to 2,348,665 _2322 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -1 0 1 2at 2343.493 kb on + strandat 2343.493 kb on + strandat 2343.540 kb on + strandat 2343.540 kb on + strandat 2343.541 kb on - strandat 2343.543 kb on - strandat 2343.543 kb on - strandat 2343.851 kb on + strand, within EX28DRAFT_2319at 2343.999 kb on + strand, within EX28DRAFT_2319at 2343.999 kb on + strand, within EX28DRAFT_2319at 2344.267 kb on + strandat 2344.374 kb on - strandat 2344.402 kb on - strandat 2344.402 kb on - strandat 2344.404 kb on + strandat 2344.837 kb on - strand, within EX28DRAFT_2320at 2345.194 kb on + strand, within EX28DRAFT_2320at 2345.194 kb on + strand, within EX28DRAFT_2320at 2345.221 kb on + strand, within EX28DRAFT_2320at 2345.221 kb on + strand, within EX28DRAFT_2320at 2345.242 kb on - strandat 2345.314 kb on + strandat 2345.314 kb on + strandat 2345.315 kb on - strandat 2345.315 kb on - strandat 2345.315 kb on - strandat 2345.317 kb on + strandat 2345.318 kb on - strandat 2345.318 kb on - strandat 2345.318 kb on - strandat 2345.319 kb on + strandat 2345.320 kb on - strandat 2345.457 kb on + strand, within EX28DRAFT_2321at 2345.457 kb on + strand, within EX28DRAFT_2321at 2345.458 kb on - strand, within EX28DRAFT_2321at 2345.458 kb on - strand, within EX28DRAFT_2321at 2345.458 kb on - strand, within EX28DRAFT_2321at 2345.459 kb on + strand, within EX28DRAFT_2321at 2345.459 kb on + strand, within EX28DRAFT_2321at 2345.460 kb on - strand, within EX28DRAFT_2321at 2345.889 kb on + strandat 2345.890 kb on - strandat 2345.893 kb on + strandat 2345.894 kb on - strandat 2345.899 kb on + strandat 2345.912 kb on + strandat 2345.913 kb on - strandat 2345.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,343,493 + -0.1
2,343,493 + -0.7
2,343,540 + +0.5
2,343,540 + +0.5
2,343,541 - -0.3
2,343,543 - +0.4
2,343,543 - -0.7
2,343,851 + EX28DRAFT_2319 0.42 +0.4
2,343,999 + EX28DRAFT_2319 0.63 +0.1
2,343,999 + EX28DRAFT_2319 0.63 +0.2
2,344,267 + +0.7
2,344,374 - +0.6
2,344,402 - +0.6
2,344,402 - +2.5
2,344,404 + -0.4
2,344,837 - EX28DRAFT_2320 0.47 +0.1
2,345,194 + EX28DRAFT_2320 0.85 +0.1
2,345,194 + EX28DRAFT_2320 0.85 +0.1
2,345,221 + EX28DRAFT_2320 0.88 +0.1
2,345,221 + EX28DRAFT_2320 0.88 +0.6
2,345,242 - -0.2
2,345,314 + +0.5
2,345,314 + +1.0
2,345,315 - -0.3
2,345,315 - -0.6
2,345,315 - -0.0
2,345,317 + +0.4
2,345,318 - -0.1
2,345,318 - +1.7
2,345,318 - -0.2
2,345,319 + +0.5
2,345,320 - +0.0
2,345,457 + EX28DRAFT_2321 0.15 +0.5
2,345,457 + EX28DRAFT_2321 0.15 +0.3
2,345,458 - EX28DRAFT_2321 0.15 -0.7
2,345,458 - EX28DRAFT_2321 0.15 -0.2
2,345,458 - EX28DRAFT_2321 0.15 +0.0
2,345,459 + EX28DRAFT_2321 0.15 -1.2
2,345,459 + EX28DRAFT_2321 0.15 -0.7
2,345,460 - EX28DRAFT_2321 0.15 -0.4
2,345,889 + +0.1
2,345,890 - +0.2
2,345,893 + -0.4
2,345,894 - +0.0
2,345,899 + +0.8
2,345,912 + +1.0
2,345,913 - +0.5
2,345,913 - +1.0

Or see this region's nucleotide sequence