Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2265

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2264 and EX28DRAFT_2265 are separated by 83 nucleotidesEX28DRAFT_2265 and EX28DRAFT_2266 are separated by 14 nucleotides EX28DRAFT_2264: EX28DRAFT_2264 - succinyl-CoA synthetase, beta subunit, at 2,286,194 to 2,287,360 _2264 EX28DRAFT_2265: EX28DRAFT_2265 - 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61), at 2,287,444 to 2,288,664 _2265 EX28DRAFT_2266: EX28DRAFT_2266 - 2-oxoglutarate dehydrogenase, E1 component, at 2,288,679 to 2,291,486 _2266 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2286.495 kb on - strand, within EX28DRAFT_2264at 2286.495 kb on - strand, within EX28DRAFT_2264at 2286.577 kb on + strand, within EX28DRAFT_2264at 2286.607 kb on - strand, within EX28DRAFT_2264at 2287.012 kb on + strand, within EX28DRAFT_2264at 2287.171 kb on + strand, within EX28DRAFT_2264at 2287.225 kb on + strand, within EX28DRAFT_2264at 2287.225 kb on + strand, within EX28DRAFT_2264at 2287.225 kb on + strand, within EX28DRAFT_2264at 2287.225 kb on + strand, within EX28DRAFT_2264at 2287.226 kb on - strand, within EX28DRAFT_2264at 2287.226 kb on - strand, within EX28DRAFT_2264at 2287.282 kb on + strandat 2287.283 kb on - strandat 2287.285 kb on + strandat 2287.367 kb on + strandat 2287.390 kb on - strandat 2287.419 kb on + strandat 2287.751 kb on - strand, within EX28DRAFT_2265at 2287.950 kb on - strand, within EX28DRAFT_2265at 2288.739 kb on - strandat 2288.739 kb on - strandat 2288.741 kb on - strandat 2288.741 kb on - strandat 2288.884 kb on - strandat 2288.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,286,495 - EX28DRAFT_2264 0.26 -0.1
2,286,495 - EX28DRAFT_2264 0.26 +0.0
2,286,577 + EX28DRAFT_2264 0.33 -2.8
2,286,607 - EX28DRAFT_2264 0.35 -0.7
2,287,012 + EX28DRAFT_2264 0.70 +0.4
2,287,171 + EX28DRAFT_2264 0.84 +0.7
2,287,225 + EX28DRAFT_2264 0.88 +0.2
2,287,225 + EX28DRAFT_2264 0.88 -0.5
2,287,225 + EX28DRAFT_2264 0.88 +0.9
2,287,225 + EX28DRAFT_2264 0.88 -0.1
2,287,226 - EX28DRAFT_2264 0.88 +1.1
2,287,226 - EX28DRAFT_2264 0.88 -0.0
2,287,282 + -0.3
2,287,283 - -0.2
2,287,285 + +0.7
2,287,367 + +0.5
2,287,390 - -0.0
2,287,419 + -0.4
2,287,751 - EX28DRAFT_2265 0.25 -2.2
2,287,950 - EX28DRAFT_2265 0.41 +0.4
2,288,739 - -0.8
2,288,739 - -4.0
2,288,741 - -0.4
2,288,741 - -1.2
2,288,884 - -1.0
2,288,894 - +2.0

Or see this region's nucleotide sequence