Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2243

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2241 and EX28DRAFT_2242 are separated by 303 nucleotidesEX28DRAFT_2242 and EX28DRAFT_2243 are separated by 105 nucleotidesEX28DRAFT_2243 and EX28DRAFT_2244 overlap by 4 nucleotidesEX28DRAFT_2244 and EX28DRAFT_2245 are separated by 22 nucleotides EX28DRAFT_2241: EX28DRAFT_2241 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 2,264,963 to 2,266,015 _2241 EX28DRAFT_2242: EX28DRAFT_2242 - YbgS-like protein, at 2,266,319 to 2,266,699 _2242 EX28DRAFT_2243: EX28DRAFT_2243 - cation diffusion facilitator family transporter, at 2,266,805 to 2,267,743 _2243 EX28DRAFT_2244: EX28DRAFT_2244 - nicotinamide mononucleotide transporter PnuC, at 2,267,740 to 2,268,459 _2244 EX28DRAFT_2245: EX28DRAFT_2245 - quinolinate synthetase (EC 2.5.1.72), at 2,268,482 to 2,269,525 _2245 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2265.869 kb on - strand, within EX28DRAFT_2241at 2265.883 kb on + strand, within EX28DRAFT_2241at 2265.883 kb on + strand, within EX28DRAFT_2241at 2265.913 kb on + strandat 2266.036 kb on - strandat 2266.041 kb on + strandat 2266.042 kb on - strandat 2266.068 kb on - strandat 2266.474 kb on + strand, within EX28DRAFT_2242at 2266.487 kb on - strand, within EX28DRAFT_2242at 2266.487 kb on - strand, within EX28DRAFT_2242at 2266.519 kb on + strand, within EX28DRAFT_2242at 2266.519 kb on + strand, within EX28DRAFT_2242at 2266.520 kb on - strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.585 kb on + strand, within EX28DRAFT_2242at 2266.606 kb on + strand, within EX28DRAFT_2242at 2266.606 kb on + strand, within EX28DRAFT_2242at 2266.656 kb on + strand, within EX28DRAFT_2242at 2266.656 kb on + strand, within EX28DRAFT_2242at 2266.657 kb on - strand, within EX28DRAFT_2242at 2266.675 kb on + strandat 2266.675 kb on + strandat 2266.759 kb on - strandat 2266.762 kb on - strandat 2267.036 kb on - strand, within EX28DRAFT_2243at 2267.111 kb on - strand, within EX28DRAFT_2243at 2267.636 kb on + strand, within EX28DRAFT_2243at 2267.636 kb on + strand, within EX28DRAFT_2243at 2267.669 kb on + strandat 2267.670 kb on - strandat 2267.781 kb on + strandat 2267.828 kb on + strand, within EX28DRAFT_2244at 2267.918 kb on + strand, within EX28DRAFT_2244at 2267.919 kb on - strand, within EX28DRAFT_2244at 2268.081 kb on + strand, within EX28DRAFT_2244at 2268.081 kb on + strand, within EX28DRAFT_2244at 2268.082 kb on - strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.095 kb on - strand, within EX28DRAFT_2244at 2268.213 kb on - strand, within EX28DRAFT_2244at 2268.258 kb on - strand, within EX28DRAFT_2244at 2268.352 kb on - strand, within EX28DRAFT_2244at 2268.422 kb on - strandat 2268.422 kb on - strandat 2268.423 kb on + strandat 2268.423 kb on + strandat 2268.424 kb on - strandat 2268.424 kb on - strandat 2268.483 kb on + strandat 2268.483 kb on + strandat 2268.483 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.488 kb on - strandat 2268.492 kb on - strandat 2268.531 kb on - strandat 2268.724 kb on - strand, within EX28DRAFT_2245

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,265,869 - EX28DRAFT_2241 0.86 -0.9
2,265,883 + EX28DRAFT_2241 0.87 -0.8
2,265,883 + EX28DRAFT_2241 0.87 +0.2
2,265,913 + -3.2
2,266,036 - -1.0
2,266,041 + -0.4
2,266,042 - +1.0
2,266,068 - -0.8
2,266,474 + EX28DRAFT_2242 0.41 +0.1
2,266,487 - EX28DRAFT_2242 0.44 +5.0
2,266,487 - EX28DRAFT_2242 0.44 -0.7
2,266,519 + EX28DRAFT_2242 0.52 +0.8
2,266,519 + EX28DRAFT_2242 0.52 -0.6
2,266,520 - EX28DRAFT_2242 0.53 -0.8
2,266,585 + EX28DRAFT_2242 0.70 +0.8
2,266,585 + EX28DRAFT_2242 0.70 +0.4
2,266,585 + EX28DRAFT_2242 0.70 +0.4
2,266,585 + EX28DRAFT_2242 0.70 -1.1
2,266,585 + EX28DRAFT_2242 0.70 +0.2
2,266,585 + EX28DRAFT_2242 0.70 -1.3
2,266,606 + EX28DRAFT_2242 0.75 -1.3
2,266,606 + EX28DRAFT_2242 0.75 +0.1
2,266,656 + EX28DRAFT_2242 0.88 +0.2
2,266,656 + EX28DRAFT_2242 0.88 -0.3
2,266,657 - EX28DRAFT_2242 0.89 +0.6
2,266,675 + -1.4
2,266,675 + -0.4
2,266,759 - -0.0
2,266,762 - -0.6
2,267,036 - EX28DRAFT_2243 0.25 -2.4
2,267,111 - EX28DRAFT_2243 0.33 -0.2
2,267,636 + EX28DRAFT_2243 0.88 -3.4
2,267,636 + EX28DRAFT_2243 0.88 -1.3
2,267,669 + -1.6
2,267,670 - -1.4
2,267,781 + +0.1
2,267,828 + EX28DRAFT_2244 0.12 -0.6
2,267,918 + EX28DRAFT_2244 0.25 -0.9
2,267,919 - EX28DRAFT_2244 0.25 -0.0
2,268,081 + EX28DRAFT_2244 0.47 +0.2
2,268,081 + EX28DRAFT_2244 0.47 -0.1
2,268,082 - EX28DRAFT_2244 0.47 -0.1
2,268,083 + EX28DRAFT_2244 0.48 -0.1
2,268,083 + EX28DRAFT_2244 0.48 +0.6
2,268,083 + EX28DRAFT_2244 0.48 -1.0
2,268,083 + EX28DRAFT_2244 0.48 -0.5
2,268,083 + EX28DRAFT_2244 0.48 -1.6
2,268,083 + EX28DRAFT_2244 0.48 +0.1
2,268,083 + EX28DRAFT_2244 0.48 -0.5
2,268,083 + EX28DRAFT_2244 0.48 +0.4
2,268,095 - EX28DRAFT_2244 0.49 -0.7
2,268,213 - EX28DRAFT_2244 0.66 -0.3
2,268,258 - EX28DRAFT_2244 0.72 -0.2
2,268,352 - EX28DRAFT_2244 0.85 -0.5
2,268,422 - +0.1
2,268,422 - -0.2
2,268,423 + -0.2
2,268,423 + -0.4
2,268,424 - -0.2
2,268,424 - +0.5
2,268,483 + +0.9
2,268,483 + -0.6
2,268,483 + +0.4
2,268,487 + +0.6
2,268,487 + -0.2
2,268,487 + -0.5
2,268,487 + -1.4
2,268,487 + -0.5
2,268,488 - -0.1
2,268,492 - +0.2
2,268,531 - -0.7
2,268,724 - EX28DRAFT_2245 0.23 -1.5

Or see this region's nucleotide sequence