Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2239 and EX28DRAFT_2240 are separated by 206 nucleotides EX28DRAFT_2240 and EX28DRAFT_2241 are separated by 61 nucleotides
EX28DRAFT_2239: EX28DRAFT_2239 - galactose mutarotase, at 2,262,902 to 2,263,942
_2239
EX28DRAFT_2240: EX28DRAFT_2240 - phosphoglycerate mutase, BPG-dependent, family 1, at 2,264,149 to 2,264,901
_2240
EX28DRAFT_2241: EX28DRAFT_2241 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 2,264,963 to 2,266,015
_2241
Position (kb)
2264
2265 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2263.175 kb on + strand, within EX28DRAFT_2239 at 2263.430 kb on + strand, within EX28DRAFT_2239 at 2263.431 kb on - strand, within EX28DRAFT_2239 at 2263.623 kb on + strand, within EX28DRAFT_2239 at 2263.624 kb on - strand, within EX28DRAFT_2239 at 2263.624 kb on - strand, within EX28DRAFT_2239 at 2263.631 kb on + strand, within EX28DRAFT_2239 at 2263.631 kb on + strand, within EX28DRAFT_2239 at 2263.667 kb on - strand, within EX28DRAFT_2239 at 2263.724 kb on + strand, within EX28DRAFT_2239 at 2263.724 kb on + strand, within EX28DRAFT_2239 at 2263.764 kb on - strand, within EX28DRAFT_2239 at 2263.904 kb on + strand at 2263.905 kb on - strand at 2264.039 kb on + strand at 2264.039 kb on + strand at 2264.143 kb on + strand at 2264.160 kb on + strand at 2264.274 kb on + strand, within EX28DRAFT_2240 at 2264.275 kb on - strand, within EX28DRAFT_2240 at 2264.960 kb on - strand at 2265.007 kb on + strand at 2265.008 kb on - strand at 2265.058 kb on - strand at 2265.091 kb on + strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.092 kb on - strand, within EX28DRAFT_2241 at 2265.174 kb on - strand, within EX28DRAFT_2241 at 2265.295 kb on - strand, within EX28DRAFT_2241 at 2265.295 kb on - strand, within EX28DRAFT_2241 at 2265.869 kb on - strand, within EX28DRAFT_2241 at 2265.883 kb on + strand, within EX28DRAFT_2241 at 2265.883 kb on + strand, within EX28DRAFT_2241
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,263,175 + EX28DRAFT_2239 0.26 +0.2 2,263,430 + EX28DRAFT_2239 0.51 +0.4 2,263,431 - EX28DRAFT_2239 0.51 +0.4 2,263,623 + EX28DRAFT_2239 0.69 +0.1 2,263,624 - EX28DRAFT_2239 0.69 +0.4 2,263,624 - EX28DRAFT_2239 0.69 -0.2 2,263,631 + EX28DRAFT_2239 0.70 +0.3 2,263,631 + EX28DRAFT_2239 0.70 -3.3 2,263,667 - EX28DRAFT_2239 0.73 +0.2 2,263,724 + EX28DRAFT_2239 0.79 -1.3 2,263,724 + EX28DRAFT_2239 0.79 -0.3 2,263,764 - EX28DRAFT_2239 0.83 -1.1 2,263,904 + +0.6 2,263,905 - -0.2 2,264,039 + +1.6 2,264,039 + -1.5 2,264,143 + -2.7 2,264,160 + -1.5 2,264,274 + EX28DRAFT_2240 0.17 -2.3 2,264,275 - EX28DRAFT_2240 0.17 -3.5 2,264,960 - -0.1 2,265,007 + -0.9 2,265,008 - -0.9 2,265,058 - -0.6 2,265,091 + EX28DRAFT_2241 0.12 +1.2 2,265,092 - EX28DRAFT_2241 0.12 -1.6 2,265,092 - EX28DRAFT_2241 0.12 -1.1 2,265,092 - EX28DRAFT_2241 0.12 -0.6 2,265,092 - EX28DRAFT_2241 0.12 -1.7 2,265,174 - EX28DRAFT_2241 0.20 -3.0 2,265,295 - EX28DRAFT_2241 0.32 -0.7 2,265,295 - EX28DRAFT_2241 0.32 -0.5 2,265,869 - EX28DRAFT_2241 0.86 -0.9 2,265,883 + EX28DRAFT_2241 0.87 -0.8 2,265,883 + EX28DRAFT_2241 0.87 +0.2
Or see this region's nucleotide sequence