Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2215 and EX28DRAFT_2216 overlap by 4 nucleotides EX28DRAFT_2216 and EX28DRAFT_2217 are separated by 68 nucleotides
EX28DRAFT_2215: EX28DRAFT_2215 - 8-amino-7-oxononanoate synthase, at 2,238,005 to 2,239,162
_2215
EX28DRAFT_2216: EX28DRAFT_2216 - biotin synthase (EC 2.8.1.6), at 2,239,159 to 2,240,199
_2216
EX28DRAFT_2217: EX28DRAFT_2217 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 2,240,268 to 2,241,575
_2217
Position (kb)
2239
2240
2241 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2238.268 kb on + strand, within EX28DRAFT_2215 at 2238.268 kb on + strand, within EX28DRAFT_2215 at 2238.269 kb on - strand, within EX28DRAFT_2215 at 2238.269 kb on - strand, within EX28DRAFT_2215 at 2238.373 kb on - strand, within EX28DRAFT_2215 at 2238.919 kb on - strand, within EX28DRAFT_2215 at 2239.141 kb on + strand at 2239.141 kb on + strand at 2239.142 kb on - strand at 2239.344 kb on - strand, within EX28DRAFT_2216 at 2239.751 kb on + strand, within EX28DRAFT_2216 at 2239.751 kb on + strand, within EX28DRAFT_2216 at 2239.751 kb on + strand, within EX28DRAFT_2216 at 2239.752 kb on - strand, within EX28DRAFT_2216 at 2239.752 kb on - strand, within EX28DRAFT_2216 at 2239.755 kb on - strand, within EX28DRAFT_2216 at 2239.815 kb on + strand, within EX28DRAFT_2216 at 2239.816 kb on - strand, within EX28DRAFT_2216 at 2239.816 kb on - strand, within EX28DRAFT_2216 at 2239.865 kb on + strand, within EX28DRAFT_2216 at 2240.024 kb on + strand, within EX28DRAFT_2216 at 2240.223 kb on + strand at 2240.242 kb on + strand at 2240.321 kb on + strand at 2240.321 kb on + strand at 2240.322 kb on - strand at 2240.334 kb on + strand at 2240.334 kb on + strand at 2240.334 kb on + strand at 2240.335 kb on - strand at 2240.461 kb on - strand, within EX28DRAFT_2217 at 2240.557 kb on + strand, within EX28DRAFT_2217 at 2240.557 kb on + strand, within EX28DRAFT_2217 at 2240.662 kb on - strand, within EX28DRAFT_2217 at 2240.716 kb on - strand, within EX28DRAFT_2217 at 2240.716 kb on - strand, within EX28DRAFT_2217 at 2240.953 kb on - strand, within EX28DRAFT_2217 at 2241.197 kb on + strand, within EX28DRAFT_2217 at 2241.198 kb on - strand, within EX28DRAFT_2217
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,238,268 + EX28DRAFT_2215 0.23 -1.8 2,238,268 + EX28DRAFT_2215 0.23 -2.5 2,238,269 - EX28DRAFT_2215 0.23 -1.2 2,238,269 - EX28DRAFT_2215 0.23 -0.2 2,238,373 - EX28DRAFT_2215 0.32 -2.4 2,238,919 - EX28DRAFT_2215 0.79 -1.4 2,239,141 + -1.4 2,239,141 + -0.7 2,239,142 - -1.3 2,239,344 - EX28DRAFT_2216 0.18 -3.0 2,239,751 + EX28DRAFT_2216 0.57 -3.4 2,239,751 + EX28DRAFT_2216 0.57 -0.9 2,239,751 + EX28DRAFT_2216 0.57 -2.1 2,239,752 - EX28DRAFT_2216 0.57 -0.4 2,239,752 - EX28DRAFT_2216 0.57 -1.4 2,239,755 - EX28DRAFT_2216 0.57 -1.9 2,239,815 + EX28DRAFT_2216 0.63 -1.1 2,239,816 - EX28DRAFT_2216 0.63 -2.8 2,239,816 - EX28DRAFT_2216 0.63 -3.3 2,239,865 + EX28DRAFT_2216 0.68 -2.6 2,240,024 + EX28DRAFT_2216 0.83 -0.1 2,240,223 + -5.2 2,240,242 + -3.1 2,240,321 + -0.8 2,240,321 + -1.5 2,240,322 - -1.1 2,240,334 + -2.5 2,240,334 + -1.9 2,240,334 + -4.9 2,240,335 - -1.3 2,240,461 - EX28DRAFT_2217 0.15 +0.0 2,240,557 + EX28DRAFT_2217 0.22 -2.4 2,240,557 + EX28DRAFT_2217 0.22 -0.7 2,240,662 - EX28DRAFT_2217 0.30 -2.4 2,240,716 - EX28DRAFT_2217 0.34 -1.7 2,240,716 - EX28DRAFT_2217 0.34 -2.7 2,240,953 - EX28DRAFT_2217 0.52 -0.5 2,241,197 + EX28DRAFT_2217 0.71 -2.8 2,241,198 - EX28DRAFT_2217 0.71 -0.8
Or see this region's nucleotide sequence