Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2216

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2215 and EX28DRAFT_2216 overlap by 4 nucleotidesEX28DRAFT_2216 and EX28DRAFT_2217 are separated by 68 nucleotides EX28DRAFT_2215: EX28DRAFT_2215 - 8-amino-7-oxononanoate synthase, at 2,238,005 to 2,239,162 _2215 EX28DRAFT_2216: EX28DRAFT_2216 - biotin synthase (EC 2.8.1.6), at 2,239,159 to 2,240,199 _2216 EX28DRAFT_2217: EX28DRAFT_2217 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 2,240,268 to 2,241,575 _2217 Position (kb) 2239 2240 2241Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2238.268 kb on + strand, within EX28DRAFT_2215at 2238.268 kb on + strand, within EX28DRAFT_2215at 2238.269 kb on - strand, within EX28DRAFT_2215at 2238.269 kb on - strand, within EX28DRAFT_2215at 2238.373 kb on - strand, within EX28DRAFT_2215at 2238.919 kb on - strand, within EX28DRAFT_2215at 2239.141 kb on + strandat 2239.141 kb on + strandat 2239.142 kb on - strandat 2239.344 kb on - strand, within EX28DRAFT_2216at 2239.751 kb on + strand, within EX28DRAFT_2216at 2239.751 kb on + strand, within EX28DRAFT_2216at 2239.751 kb on + strand, within EX28DRAFT_2216at 2239.752 kb on - strand, within EX28DRAFT_2216at 2239.752 kb on - strand, within EX28DRAFT_2216at 2239.755 kb on - strand, within EX28DRAFT_2216at 2239.815 kb on + strand, within EX28DRAFT_2216at 2239.816 kb on - strand, within EX28DRAFT_2216at 2239.816 kb on - strand, within EX28DRAFT_2216at 2239.865 kb on + strand, within EX28DRAFT_2216at 2240.024 kb on + strand, within EX28DRAFT_2216at 2240.223 kb on + strandat 2240.242 kb on + strandat 2240.321 kb on + strandat 2240.321 kb on + strandat 2240.322 kb on - strandat 2240.334 kb on + strandat 2240.334 kb on + strandat 2240.334 kb on + strandat 2240.335 kb on - strandat 2240.461 kb on - strand, within EX28DRAFT_2217at 2240.557 kb on + strand, within EX28DRAFT_2217at 2240.557 kb on + strand, within EX28DRAFT_2217at 2240.662 kb on - strand, within EX28DRAFT_2217at 2240.716 kb on - strand, within EX28DRAFT_2217at 2240.716 kb on - strand, within EX28DRAFT_2217at 2240.953 kb on - strand, within EX28DRAFT_2217at 2241.197 kb on + strand, within EX28DRAFT_2217at 2241.198 kb on - strand, within EX28DRAFT_2217

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,238,268 + EX28DRAFT_2215 0.23 -1.8
2,238,268 + EX28DRAFT_2215 0.23 -2.5
2,238,269 - EX28DRAFT_2215 0.23 -1.2
2,238,269 - EX28DRAFT_2215 0.23 -0.2
2,238,373 - EX28DRAFT_2215 0.32 -2.4
2,238,919 - EX28DRAFT_2215 0.79 -1.4
2,239,141 + -1.4
2,239,141 + -0.7
2,239,142 - -1.3
2,239,344 - EX28DRAFT_2216 0.18 -3.0
2,239,751 + EX28DRAFT_2216 0.57 -3.4
2,239,751 + EX28DRAFT_2216 0.57 -0.9
2,239,751 + EX28DRAFT_2216 0.57 -2.1
2,239,752 - EX28DRAFT_2216 0.57 -0.4
2,239,752 - EX28DRAFT_2216 0.57 -1.4
2,239,755 - EX28DRAFT_2216 0.57 -1.9
2,239,815 + EX28DRAFT_2216 0.63 -1.1
2,239,816 - EX28DRAFT_2216 0.63 -2.8
2,239,816 - EX28DRAFT_2216 0.63 -3.3
2,239,865 + EX28DRAFT_2216 0.68 -2.6
2,240,024 + EX28DRAFT_2216 0.83 -0.1
2,240,223 + -5.2
2,240,242 + -3.1
2,240,321 + -0.8
2,240,321 + -1.5
2,240,322 - -1.1
2,240,334 + -2.5
2,240,334 + -1.9
2,240,334 + -4.9
2,240,335 - -1.3
2,240,461 - EX28DRAFT_2217 0.15 +0.0
2,240,557 + EX28DRAFT_2217 0.22 -2.4
2,240,557 + EX28DRAFT_2217 0.22 -0.7
2,240,662 - EX28DRAFT_2217 0.30 -2.4
2,240,716 - EX28DRAFT_2217 0.34 -1.7
2,240,716 - EX28DRAFT_2217 0.34 -2.7
2,240,953 - EX28DRAFT_2217 0.52 -0.5
2,241,197 + EX28DRAFT_2217 0.71 -2.8
2,241,198 - EX28DRAFT_2217 0.71 -0.8

Or see this region's nucleotide sequence