Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2213

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2212 and EX28DRAFT_2213 overlap by 38 nucleotidesEX28DRAFT_2213 and EX28DRAFT_2214 overlap by 23 nucleotidesEX28DRAFT_2214 and EX28DRAFT_2215 overlap by 17 nucleotides EX28DRAFT_2212: EX28DRAFT_2212 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,235,887 to 2,236,609 _2212 EX28DRAFT_2213: EX28DRAFT_2213 - dethiobiotin synthase, at 2,236,572 to 2,237,288 _2213 EX28DRAFT_2214: EX28DRAFT_2214 - malonyl-acyl carrier protein O-methyltransferase BioC, at 2,237,266 to 2,238,021 _2214 EX28DRAFT_2215: EX28DRAFT_2215 - 8-amino-7-oxononanoate synthase, at 2,238,005 to 2,239,162 _2215 Position (kb) 2236 2237 2238Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2235.634 kb on + strandat 2235.863 kb on - strandat 2235.863 kb on - strandat 2235.931 kb on + strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.937 kb on - strandat 2235.974 kb on - strand, within EX28DRAFT_2212at 2236.139 kb on + strand, within EX28DRAFT_2212at 2236.139 kb on + strand, within EX28DRAFT_2212at 2236.139 kb on + strand, within EX28DRAFT_2212at 2236.139 kb on + strand, within EX28DRAFT_2212at 2236.139 kb on + strand, within EX28DRAFT_2212at 2236.140 kb on - strand, within EX28DRAFT_2212at 2236.140 kb on - strand, within EX28DRAFT_2212at 2236.140 kb on - strand, within EX28DRAFT_2212at 2236.196 kb on - strand, within EX28DRAFT_2212at 2236.247 kb on + strand, within EX28DRAFT_2212at 2236.248 kb on - strand, within EX28DRAFT_2212at 2236.268 kb on + strand, within EX28DRAFT_2212at 2236.446 kb on + strand, within EX28DRAFT_2212at 2236.447 kb on - strand, within EX28DRAFT_2212at 2236.531 kb on + strand, within EX28DRAFT_2212at 2236.712 kb on - strand, within EX28DRAFT_2213at 2237.163 kb on - strand, within EX28DRAFT_2213at 2237.163 kb on - strand, within EX28DRAFT_2213at 2237.260 kb on + strandat 2237.524 kb on + strand, within EX28DRAFT_2214at 2237.963 kb on + strandat 2237.964 kb on - strandat 2237.964 kb on - strandat 2238.268 kb on + strand, within EX28DRAFT_2215at 2238.268 kb on + strand, within EX28DRAFT_2215at 2238.269 kb on - strand, within EX28DRAFT_2215at 2238.269 kb on - strand, within EX28DRAFT_2215

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,235,634 + -0.4
2,235,863 - +0.2
2,235,863 - -0.1
2,235,931 + -0.1
2,235,932 - +0.2
2,235,932 - -0.7
2,235,932 - -0.5
2,235,932 - +0.1
2,235,932 - -0.0
2,235,937 - -0.2
2,235,974 - EX28DRAFT_2212 0.12 +1.8
2,236,139 + EX28DRAFT_2212 0.35 -0.2
2,236,139 + EX28DRAFT_2212 0.35 +0.2
2,236,139 + EX28DRAFT_2212 0.35 +1.1
2,236,139 + EX28DRAFT_2212 0.35 -0.4
2,236,139 + EX28DRAFT_2212 0.35 +0.3
2,236,140 - EX28DRAFT_2212 0.35 +0.1
2,236,140 - EX28DRAFT_2212 0.35 +0.4
2,236,140 - EX28DRAFT_2212 0.35 -0.1
2,236,196 - EX28DRAFT_2212 0.43 +0.3
2,236,247 + EX28DRAFT_2212 0.50 +1.2
2,236,248 - EX28DRAFT_2212 0.50 +0.8
2,236,268 + EX28DRAFT_2212 0.53 -0.2
2,236,446 + EX28DRAFT_2212 0.77 +0.5
2,236,447 - EX28DRAFT_2212 0.77 +0.2
2,236,531 + EX28DRAFT_2212 0.89 -0.1
2,236,712 - EX28DRAFT_2213 0.20 -2.1
2,237,163 - EX28DRAFT_2213 0.82 -0.6
2,237,163 - EX28DRAFT_2213 0.82 -3.1
2,237,260 + -1.5
2,237,524 + EX28DRAFT_2214 0.34 -0.6
2,237,963 + -0.4
2,237,964 - +0.1
2,237,964 - +0.0
2,238,268 + EX28DRAFT_2215 0.23 -1.8
2,238,268 + EX28DRAFT_2215 0.23 -2.5
2,238,269 - EX28DRAFT_2215 0.23 -1.2
2,238,269 - EX28DRAFT_2215 0.23 -0.2

Or see this region's nucleotide sequence