Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2212 and EX28DRAFT_2213 overlap by 38 nucleotides EX28DRAFT_2213 and EX28DRAFT_2214 overlap by 23 nucleotides EX28DRAFT_2214 and EX28DRAFT_2215 overlap by 17 nucleotides
EX28DRAFT_2212: EX28DRAFT_2212 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,235,887 to 2,236,609
_2212
EX28DRAFT_2213: EX28DRAFT_2213 - dethiobiotin synthase, at 2,236,572 to 2,237,288
_2213
EX28DRAFT_2214: EX28DRAFT_2214 - malonyl-acyl carrier protein O-methyltransferase BioC, at 2,237,266 to 2,238,021
_2214
EX28DRAFT_2215: EX28DRAFT_2215 - 8-amino-7-oxononanoate synthase, at 2,238,005 to 2,239,162
_2215
Position (kb)
2236
2237
2238 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2235.634 kb on + strand at 2235.863 kb on - strand at 2235.863 kb on - strand at 2235.931 kb on + strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.937 kb on - strand at 2235.974 kb on - strand, within EX28DRAFT_2212 at 2236.139 kb on + strand, within EX28DRAFT_2212 at 2236.139 kb on + strand, within EX28DRAFT_2212 at 2236.139 kb on + strand, within EX28DRAFT_2212 at 2236.139 kb on + strand, within EX28DRAFT_2212 at 2236.139 kb on + strand, within EX28DRAFT_2212 at 2236.140 kb on - strand, within EX28DRAFT_2212 at 2236.140 kb on - strand, within EX28DRAFT_2212 at 2236.140 kb on - strand, within EX28DRAFT_2212 at 2236.196 kb on - strand, within EX28DRAFT_2212 at 2236.247 kb on + strand, within EX28DRAFT_2212 at 2236.248 kb on - strand, within EX28DRAFT_2212 at 2236.268 kb on + strand, within EX28DRAFT_2212 at 2236.446 kb on + strand, within EX28DRAFT_2212 at 2236.447 kb on - strand, within EX28DRAFT_2212 at 2236.531 kb on + strand, within EX28DRAFT_2212 at 2236.712 kb on - strand, within EX28DRAFT_2213 at 2237.163 kb on - strand, within EX28DRAFT_2213 at 2237.163 kb on - strand, within EX28DRAFT_2213 at 2237.260 kb on + strand at 2237.524 kb on + strand, within EX28DRAFT_2214 at 2237.963 kb on + strand at 2237.964 kb on - strand at 2237.964 kb on - strand at 2238.268 kb on + strand, within EX28DRAFT_2215 at 2238.268 kb on + strand, within EX28DRAFT_2215 at 2238.269 kb on - strand, within EX28DRAFT_2215 at 2238.269 kb on - strand, within EX28DRAFT_2215
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,235,634 + -0.4 2,235,863 - +0.2 2,235,863 - -0.1 2,235,931 + -0.1 2,235,932 - +0.2 2,235,932 - -0.7 2,235,932 - -0.5 2,235,932 - +0.1 2,235,932 - -0.0 2,235,937 - -0.2 2,235,974 - EX28DRAFT_2212 0.12 +1.8 2,236,139 + EX28DRAFT_2212 0.35 -0.2 2,236,139 + EX28DRAFT_2212 0.35 +0.2 2,236,139 + EX28DRAFT_2212 0.35 +1.1 2,236,139 + EX28DRAFT_2212 0.35 -0.4 2,236,139 + EX28DRAFT_2212 0.35 +0.3 2,236,140 - EX28DRAFT_2212 0.35 +0.1 2,236,140 - EX28DRAFT_2212 0.35 +0.4 2,236,140 - EX28DRAFT_2212 0.35 -0.1 2,236,196 - EX28DRAFT_2212 0.43 +0.3 2,236,247 + EX28DRAFT_2212 0.50 +1.2 2,236,248 - EX28DRAFT_2212 0.50 +0.8 2,236,268 + EX28DRAFT_2212 0.53 -0.2 2,236,446 + EX28DRAFT_2212 0.77 +0.5 2,236,447 - EX28DRAFT_2212 0.77 +0.2 2,236,531 + EX28DRAFT_2212 0.89 -0.1 2,236,712 - EX28DRAFT_2213 0.20 -2.1 2,237,163 - EX28DRAFT_2213 0.82 -0.6 2,237,163 - EX28DRAFT_2213 0.82 -3.1 2,237,260 + -1.5 2,237,524 + EX28DRAFT_2214 0.34 -0.6 2,237,963 + -0.4 2,237,964 - +0.1 2,237,964 - +0.0 2,238,268 + EX28DRAFT_2215 0.23 -1.8 2,238,268 + EX28DRAFT_2215 0.23 -2.5 2,238,269 - EX28DRAFT_2215 0.23 -1.2 2,238,269 - EX28DRAFT_2215 0.23 -0.2
Or see this region's nucleotide sequence