Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2193 and EX28DRAFT_2194 are separated by 97 nucleotides EX28DRAFT_2194 and EX28DRAFT_2195 are separated by 207 nucleotides EX28DRAFT_2195 and EX28DRAFT_2196 overlap by 4 nucleotides
EX28DRAFT_2193: EX28DRAFT_2193 - Rad3-related DNA helicases, at 2,215,234 to 2,217,411
_2193
EX28DRAFT_2194: EX28DRAFT_2194 - Superfamily II DNA and RNA helicases, at 2,217,509 to 2,218,894
_2194
EX28DRAFT_2195: EX28DRAFT_2195 - transcriptional regulator, TetR family, at 2,219,102 to 2,219,779
_2195
EX28DRAFT_2196: EX28DRAFT_2196 - Multidrug resistance efflux pump, at 2,219,776 to 2,220,771
_2196
Position (kb)
2217
2218
2219 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2216.691 kb on + strand, within EX28DRAFT_2193 at 2216.810 kb on + strand, within EX28DRAFT_2193 at 2216.913 kb on + strand, within EX28DRAFT_2193 at 2216.913 kb on + strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.914 kb on - strand, within EX28DRAFT_2193 at 2216.965 kb on - strand, within EX28DRAFT_2193 at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.368 kb on + strand at 2217.369 kb on - strand at 2217.369 kb on - strand at 2217.369 kb on - strand at 2217.426 kb on + strand at 2217.432 kb on - strand at 2217.433 kb on + strand at 2217.434 kb on - strand at 2217.898 kb on + strand, within EX28DRAFT_2194 at 2217.909 kb on + strand, within EX28DRAFT_2194 at 2217.909 kb on + strand, within EX28DRAFT_2194 at 2218.165 kb on + strand, within EX28DRAFT_2194 at 2218.166 kb on - strand, within EX28DRAFT_2194 at 2218.834 kb on - strand at 2218.895 kb on - strand at 2218.928 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.943 kb on + strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.944 kb on - strand at 2218.945 kb on + strand at 2218.945 kb on + strand at 2218.945 kb on + strand at 2219.023 kb on + strand at 2219.064 kb on - strand at 2219.107 kb on + strand at 2219.253 kb on - strand, within EX28DRAFT_2195 at 2219.274 kb on + strand, within EX28DRAFT_2195 at 2219.274 kb on + strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.275 kb on - strand, within EX28DRAFT_2195 at 2219.417 kb on - strand, within EX28DRAFT_2195 at 2219.443 kb on + strand, within EX28DRAFT_2195 at 2219.444 kb on - strand, within EX28DRAFT_2195 at 2219.465 kb on - strand, within EX28DRAFT_2195 at 2219.564 kb on + strand, within EX28DRAFT_2195 at 2219.565 kb on - strand, within EX28DRAFT_2195 at 2219.566 kb on + strand, within EX28DRAFT_2195 at 2219.566 kb on + strand, within EX28DRAFT_2195 at 2219.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,216,691 + EX28DRAFT_2193 0.67 +1.4 2,216,810 + EX28DRAFT_2193 0.72 +0.1 2,216,913 + EX28DRAFT_2193 0.77 -0.6 2,216,913 + EX28DRAFT_2193 0.77 +0.4 2,216,914 - EX28DRAFT_2193 0.77 -0.1 2,216,914 - EX28DRAFT_2193 0.77 -1.0 2,216,914 - EX28DRAFT_2193 0.77 -0.6 2,216,914 - EX28DRAFT_2193 0.77 -0.0 2,216,965 - EX28DRAFT_2193 0.79 +0.1 2,217,368 + +0.5 2,217,368 + +0.6 2,217,368 + +0.5 2,217,368 + +0.1 2,217,369 - -1.1 2,217,369 - -0.2 2,217,369 - -0.2 2,217,426 + -0.8 2,217,432 - +0.3 2,217,433 + -1.1 2,217,434 - +0.0 2,217,898 + EX28DRAFT_2194 0.28 -0.5 2,217,909 + EX28DRAFT_2194 0.29 +0.7 2,217,909 + EX28DRAFT_2194 0.29 +0.7 2,218,165 + EX28DRAFT_2194 0.47 +1.5 2,218,166 - EX28DRAFT_2194 0.47 +0.5 2,218,834 - +1.3 2,218,895 - +0.1 2,218,928 + +0.2 2,218,943 + -0.4 2,218,943 + +0.1 2,218,943 + -1.0 2,218,943 + -0.2 2,218,944 - -0.1 2,218,944 - -0.0 2,218,944 - +0.6 2,218,944 - +0.1 2,218,945 + +2.2 2,218,945 + -0.3 2,218,945 + +0.1 2,219,023 + +0.4 2,219,064 - +0.1 2,219,107 + -1.3 2,219,253 - EX28DRAFT_2195 0.22 +1.7 2,219,274 + EX28DRAFT_2195 0.25 +0.9 2,219,274 + EX28DRAFT_2195 0.25 -2.7 2,219,275 - EX28DRAFT_2195 0.26 +0.9 2,219,275 - EX28DRAFT_2195 0.26 +0.8 2,219,275 - EX28DRAFT_2195 0.26 +0.3 2,219,417 - EX28DRAFT_2195 0.46 -0.1 2,219,443 + EX28DRAFT_2195 0.50 -0.8 2,219,444 - EX28DRAFT_2195 0.50 -1.2 2,219,465 - EX28DRAFT_2195 0.54 +0.6 2,219,564 + EX28DRAFT_2195 0.68 +1.1 2,219,565 - EX28DRAFT_2195 0.68 -0.8 2,219,566 + EX28DRAFT_2195 0.68 +0.3 2,219,566 + EX28DRAFT_2195 0.68 +0.0 2,219,866 - -2.6
Or see this region's nucleotide sequence