Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2180 and EX28DRAFT_2181 overlap by 4 nucleotides EX28DRAFT_2181 and EX28DRAFT_2182 are separated by 125 nucleotides EX28DRAFT_2182 and EX28DRAFT_2183 are separated by 45 nucleotides
EX28DRAFT_2180: EX28DRAFT_2180 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 2,202,421 to 2,203,080
_2180
EX28DRAFT_2181: EX28DRAFT_2181 - ABC-type polar amino acid transport system, ATPase component, at 2,203,077 to 2,203,799
_2181
EX28DRAFT_2182: EX28DRAFT_2182 - Small-conductance mechanosensitive channel, at 2,203,925 to 2,206,138
_2182
EX28DRAFT_2183: EX28DRAFT_2183 - Predicted SAM-dependent methyltransferase, at 2,206,184 to 2,207,095
_2183
Position (kb)
2203
2204
2205
2206
2207 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2203.012 kb on + strand, within EX28DRAFT_2180 at 2203.163 kb on - strand, within EX28DRAFT_2181 at 2203.193 kb on + strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.335 kb on + strand, within EX28DRAFT_2181 at 2203.701 kb on - strand, within EX28DRAFT_2181 at 2203.706 kb on + strand, within EX28DRAFT_2181 at 2203.707 kb on - strand, within EX28DRAFT_2181 at 2203.816 kb on + strand at 2203.885 kb on - strand at 2203.885 kb on - strand at 2203.886 kb on + strand at 2203.886 kb on + strand at 2203.886 kb on + strand at 2203.886 kb on + strand at 2203.887 kb on - strand at 2203.887 kb on - strand at 2203.887 kb on - strand at 2203.887 kb on - strand at 2203.890 kb on + strand at 2203.891 kb on - strand at 2203.891 kb on - strand at 2203.950 kb on + strand at 2203.951 kb on - strand at 2204.277 kb on - strand, within EX28DRAFT_2182 at 2204.412 kb on - strand, within EX28DRAFT_2182 at 2204.498 kb on - strand, within EX28DRAFT_2182 at 2204.509 kb on - strand, within EX28DRAFT_2182 at 2204.711 kb on + strand, within EX28DRAFT_2182 at 2204.843 kb on - strand, within EX28DRAFT_2182 at 2204.863 kb on + strand, within EX28DRAFT_2182 at 2204.864 kb on - strand, within EX28DRAFT_2182 at 2204.864 kb on - strand, within EX28DRAFT_2182 at 2204.985 kb on - strand, within EX28DRAFT_2182 at 2204.985 kb on - strand, within EX28DRAFT_2182 at 2204.985 kb on - strand, within EX28DRAFT_2182 at 2204.994 kb on + strand, within EX28DRAFT_2182 at 2204.995 kb on - strand, within EX28DRAFT_2182 at 2205.041 kb on - strand, within EX28DRAFT_2182 at 2205.155 kb on - strand, within EX28DRAFT_2182 at 2205.241 kb on + strand, within EX28DRAFT_2182 at 2205.242 kb on - strand, within EX28DRAFT_2182 at 2205.608 kb on - strand, within EX28DRAFT_2182 at 2205.611 kb on - strand, within EX28DRAFT_2182 at 2205.611 kb on - strand, within EX28DRAFT_2182 at 2205.625 kb on + strand, within EX28DRAFT_2182 at 2205.626 kb on - strand, within EX28DRAFT_2182 at 2205.816 kb on - strand, within EX28DRAFT_2182 at 2205.845 kb on - strand, within EX28DRAFT_2182 at 2205.845 kb on - strand, within EX28DRAFT_2182 at 2206.082 kb on + strand at 2206.090 kb on - strand at 2206.185 kb on + strand at 2206.185 kb on + strand at 2206.186 kb on - strand at 2206.210 kb on + strand at 2206.210 kb on + strand at 2206.557 kb on + strand, within EX28DRAFT_2183 at 2206.558 kb on - strand, within EX28DRAFT_2183 at 2206.654 kb on + strand, within EX28DRAFT_2183 at 2206.741 kb on - strand, within EX28DRAFT_2183 at 2206.840 kb on - strand, within EX28DRAFT_2183 at 2206.999 kb on - strand, within EX28DRAFT_2183 at 2206.999 kb on - strand, within EX28DRAFT_2183
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,203,012 + EX28DRAFT_2180 0.90 +0.1 2,203,163 - EX28DRAFT_2181 0.12 +0.6 2,203,193 + EX28DRAFT_2181 0.16 +0.0 2,203,271 - EX28DRAFT_2181 0.27 +0.7 2,203,271 - EX28DRAFT_2181 0.27 +3.5 2,203,271 - EX28DRAFT_2181 0.27 +0.7 2,203,335 + EX28DRAFT_2181 0.36 -0.4 2,203,701 - EX28DRAFT_2181 0.86 -0.5 2,203,706 + EX28DRAFT_2181 0.87 +0.4 2,203,707 - EX28DRAFT_2181 0.87 -0.3 2,203,816 + -2.1 2,203,885 - +0.5 2,203,885 - +0.5 2,203,886 + -0.2 2,203,886 + -0.1 2,203,886 + +0.4 2,203,886 + +0.2 2,203,887 - -0.3 2,203,887 - +0.8 2,203,887 - -0.7 2,203,887 - +0.1 2,203,890 + +0.4 2,203,891 - +0.9 2,203,891 - +0.3 2,203,950 + -0.1 2,203,951 - +0.8 2,204,277 - EX28DRAFT_2182 0.16 -0.2 2,204,412 - EX28DRAFT_2182 0.22 +0.6 2,204,498 - EX28DRAFT_2182 0.26 -0.1 2,204,509 - EX28DRAFT_2182 0.26 +0.2 2,204,711 + EX28DRAFT_2182 0.36 +0.2 2,204,843 - EX28DRAFT_2182 0.41 +1.0 2,204,863 + EX28DRAFT_2182 0.42 -0.3 2,204,864 - EX28DRAFT_2182 0.42 -0.3 2,204,864 - EX28DRAFT_2182 0.42 +0.4 2,204,985 - EX28DRAFT_2182 0.48 -0.1 2,204,985 - EX28DRAFT_2182 0.48 -0.1 2,204,985 - EX28DRAFT_2182 0.48 +0.6 2,204,994 + EX28DRAFT_2182 0.48 -2.2 2,204,995 - EX28DRAFT_2182 0.48 +0.3 2,205,041 - EX28DRAFT_2182 0.50 +0.6 2,205,155 - EX28DRAFT_2182 0.56 -0.5 2,205,241 + EX28DRAFT_2182 0.59 +0.3 2,205,242 - EX28DRAFT_2182 0.59 -1.0 2,205,608 - EX28DRAFT_2182 0.76 +1.9 2,205,611 - EX28DRAFT_2182 0.76 -0.4 2,205,611 - EX28DRAFT_2182 0.76 +0.2 2,205,625 + EX28DRAFT_2182 0.77 +0.3 2,205,626 - EX28DRAFT_2182 0.77 -0.5 2,205,816 - EX28DRAFT_2182 0.85 +0.5 2,205,845 - EX28DRAFT_2182 0.87 -0.3 2,205,845 - EX28DRAFT_2182 0.87 +0.4 2,206,082 + +0.6 2,206,090 - -0.2 2,206,185 + +0.2 2,206,185 + -0.1 2,206,186 - -0.8 2,206,210 + -0.2 2,206,210 + +0.1 2,206,557 + EX28DRAFT_2183 0.41 -0.5 2,206,558 - EX28DRAFT_2183 0.41 -0.0 2,206,654 + EX28DRAFT_2183 0.52 -0.4 2,206,741 - EX28DRAFT_2183 0.61 -0.0 2,206,840 - EX28DRAFT_2183 0.72 +0.5 2,206,999 - EX28DRAFT_2183 0.89 -0.1 2,206,999 - EX28DRAFT_2183 0.89 -0.4
Or see this region's nucleotide sequence