Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2162 and EX28DRAFT_2163 are separated by 119 nucleotides EX28DRAFT_2163 and EX28DRAFT_2164 are separated by 210 nucleotides EX28DRAFT_2164 and EX28DRAFT_2165 are separated by 102 nucleotides
EX28DRAFT_2162: EX28DRAFT_2162 - hypothetical protein, at 2,185,857 to 2,186,108
_2162
EX28DRAFT_2163: EX28DRAFT_2163 - hypothetical protein, at 2,186,228 to 2,186,866
_2163
EX28DRAFT_2164: EX28DRAFT_2164 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 2,187,077 to 2,188,117
_2164
EX28DRAFT_2165: EX28DRAFT_2165 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,188,220 to 2,189,743
_2165
Position (kb)
2187
2188
2189 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2186.339 kb on + strand, within EX28DRAFT_2163 at 2186.340 kb on - strand, within EX28DRAFT_2163 at 2186.373 kb on - strand, within EX28DRAFT_2163 at 2186.373 kb on - strand, within EX28DRAFT_2163 at 2186.402 kb on + strand, within EX28DRAFT_2163 at 2186.420 kb on - strand, within EX28DRAFT_2163 at 2186.420 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.569 kb on + strand, within EX28DRAFT_2163 at 2186.570 kb on - strand, within EX28DRAFT_2163 at 2186.570 kb on - strand, within EX28DRAFT_2163 at 2186.645 kb on - strand, within EX28DRAFT_2163 at 2186.657 kb on + strand, within EX28DRAFT_2163 at 2186.657 kb on + strand, within EX28DRAFT_2163 at 2186.657 kb on + strand, within EX28DRAFT_2163 at 2186.682 kb on - strand, within EX28DRAFT_2163 at 2186.735 kb on + strand, within EX28DRAFT_2163 at 2186.735 kb on + strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.736 kb on - strand, within EX28DRAFT_2163 at 2186.773 kb on + strand, within EX28DRAFT_2163 at 2186.774 kb on - strand, within EX28DRAFT_2163 at 2186.808 kb on - strand at 2186.829 kb on + strand at 2186.833 kb on + strand at 2186.833 kb on + strand at 2186.862 kb on - strand at 2186.908 kb on + strand at 2186.908 kb on + strand at 2186.908 kb on + strand at 2186.938 kb on - strand at 2186.952 kb on - strand at 2186.999 kb on + strand at 2187.078 kb on + strand at 2187.078 kb on + strand at 2187.078 kb on + strand at 2187.079 kb on - strand at 2187.106 kb on - strand at 2187.176 kb on - strand at 2187.192 kb on - strand, within EX28DRAFT_2164 at 2187.192 kb on - strand, within EX28DRAFT_2164 at 2187.198 kb on - strand, within EX28DRAFT_2164 at 2187.547 kb on - strand, within EX28DRAFT_2164 at 2187.547 kb on - strand, within EX28DRAFT_2164 at 2187.547 kb on - strand, within EX28DRAFT_2164 at 2187.549 kb on + strand, within EX28DRAFT_2164 at 2187.550 kb on - strand, within EX28DRAFT_2164 at 2187.646 kb on - strand, within EX28DRAFT_2164 at 2188.065 kb on - strand at 2188.117 kb on + strand at 2188.117 kb on + strand at 2188.118 kb on - strand at 2188.122 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.155 kb on + strand at 2188.156 kb on - strand at 2188.156 kb on - strand at 2188.157 kb on + strand at 2188.158 kb on - strand at 2188.252 kb on - strand at 2188.306 kb on - strand at 2188.733 kb on - strand, within EX28DRAFT_2165
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,186,339 + EX28DRAFT_2163 0.17 -0.4 2,186,340 - EX28DRAFT_2163 0.18 -0.0 2,186,373 - EX28DRAFT_2163 0.23 -0.5 2,186,373 - EX28DRAFT_2163 0.23 +1.2 2,186,402 + EX28DRAFT_2163 0.27 -0.1 2,186,420 - EX28DRAFT_2163 0.30 -0.9 2,186,420 - EX28DRAFT_2163 0.30 -0.2 2,186,493 - EX28DRAFT_2163 0.41 +0.5 2,186,493 - EX28DRAFT_2163 0.41 +2.2 2,186,493 - EX28DRAFT_2163 0.41 +1.3 2,186,569 + EX28DRAFT_2163 0.53 -0.8 2,186,570 - EX28DRAFT_2163 0.54 +0.7 2,186,570 - EX28DRAFT_2163 0.54 -0.5 2,186,645 - EX28DRAFT_2163 0.65 -0.8 2,186,657 + EX28DRAFT_2163 0.67 -0.4 2,186,657 + EX28DRAFT_2163 0.67 -0.8 2,186,657 + EX28DRAFT_2163 0.67 -0.3 2,186,682 - EX28DRAFT_2163 0.71 +0.2 2,186,735 + EX28DRAFT_2163 0.79 -0.6 2,186,735 + EX28DRAFT_2163 0.79 +0.3 2,186,736 - EX28DRAFT_2163 0.79 +1.7 2,186,736 - EX28DRAFT_2163 0.79 -0.4 2,186,736 - EX28DRAFT_2163 0.79 +0.1 2,186,736 - EX28DRAFT_2163 0.79 -0.5 2,186,736 - EX28DRAFT_2163 0.79 +0.3 2,186,773 + EX28DRAFT_2163 0.85 -0.3 2,186,774 - EX28DRAFT_2163 0.85 +0.3 2,186,808 - -0.7 2,186,829 + +0.8 2,186,833 + +0.4 2,186,833 + -0.5 2,186,862 - +0.2 2,186,908 + -1.5 2,186,908 + -1.1 2,186,908 + +0.4 2,186,938 - +0.2 2,186,952 - +0.9 2,186,999 + -0.7 2,187,078 + -0.9 2,187,078 + -0.0 2,187,078 + -0.3 2,187,079 - -0.1 2,187,106 - -0.6 2,187,176 - -0.4 2,187,192 - EX28DRAFT_2164 0.11 -0.6 2,187,192 - EX28DRAFT_2164 0.11 +0.6 2,187,198 - EX28DRAFT_2164 0.12 +1.9 2,187,547 - EX28DRAFT_2164 0.45 +1.2 2,187,547 - EX28DRAFT_2164 0.45 -1.1 2,187,547 - EX28DRAFT_2164 0.45 -1.3 2,187,549 + EX28DRAFT_2164 0.45 -0.3 2,187,550 - EX28DRAFT_2164 0.45 +0.8 2,187,646 - EX28DRAFT_2164 0.55 +0.5 2,188,065 - -0.7 2,188,117 + +0.3 2,188,117 + -0.8 2,188,118 - -0.6 2,188,122 + -0.4 2,188,155 + +0.3 2,188,155 + -0.5 2,188,155 + -0.4 2,188,155 + -1.0 2,188,155 + +0.4 2,188,155 + -0.3 2,188,155 + +0.1 2,188,156 - -0.8 2,188,156 - -0.3 2,188,157 + -0.3 2,188,158 - -0.4 2,188,252 - +0.3 2,188,306 - -1.8 2,188,733 - EX28DRAFT_2165 0.34 -0.2
Or see this region's nucleotide sequence