Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2117

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2115 and EX28DRAFT_2116 are separated by 231 nucleotidesEX28DRAFT_2116 and EX28DRAFT_2117 are separated by 40 nucleotidesEX28DRAFT_2117 and EX28DRAFT_2118 are separated by 12 nucleotidesEX28DRAFT_2118 and EX28DRAFT_2119 are separated by 118 nucleotides EX28DRAFT_2115: EX28DRAFT_2115 - hypothetical protein, at 2,135,463 to 2,135,861 _2115 EX28DRAFT_2116: EX28DRAFT_2116 - Predicted transcriptional regulators, at 2,136,093 to 2,136,413 _2116 EX28DRAFT_2117: EX28DRAFT_2117 - arsenite/antimonite efflux pump membrane protein, at 2,136,454 to 2,137,743 _2117 EX28DRAFT_2118: EX28DRAFT_2118 - arsenate reductase (glutaredoxin), at 2,137,756 to 2,138,187 _2118 EX28DRAFT_2119: EX28DRAFT_2119 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,138,306 to 2,139,076 _2119 Position (kb) 2136 2137 2138Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 2135.668 kb on + strand, within EX28DRAFT_2115at 2135.726 kb on + strand, within EX28DRAFT_2115at 2135.809 kb on - strand, within EX28DRAFT_2115at 2135.811 kb on - strand, within EX28DRAFT_2115at 2135.822 kb on + strandat 2135.822 kb on + strandat 2135.868 kb on + strandat 2135.869 kb on - strandat 2135.939 kb on - strandat 2135.979 kb on - strandat 2135.979 kb on - strandat 2135.982 kb on + strandat 2135.983 kb on - strandat 2136.006 kb on + strandat 2136.024 kb on + strandat 2136.024 kb on + strandat 2136.049 kb on + strandat 2136.387 kb on - strandat 2136.439 kb on - strandat 2136.440 kb on + strandat 2136.440 kb on + strandat 2136.441 kb on - strandat 2136.588 kb on + strand, within EX28DRAFT_2117at 2136.590 kb on + strand, within EX28DRAFT_2117at 2136.590 kb on + strand, within EX28DRAFT_2117at 2136.606 kb on + strand, within EX28DRAFT_2117at 2136.650 kb on + strand, within EX28DRAFT_2117at 2136.650 kb on + strand, within EX28DRAFT_2117at 2136.651 kb on - strand, within EX28DRAFT_2117at 2136.738 kb on + strand, within EX28DRAFT_2117at 2136.738 kb on + strand, within EX28DRAFT_2117at 2136.739 kb on - strand, within EX28DRAFT_2117at 2136.742 kb on + strand, within EX28DRAFT_2117at 2136.742 kb on + strand, within EX28DRAFT_2117at 2136.743 kb on - strand, within EX28DRAFT_2117at 2136.745 kb on - strand, within EX28DRAFT_2117at 2136.745 kb on - strand, within EX28DRAFT_2117at 2136.888 kb on + strand, within EX28DRAFT_2117at 2136.957 kb on + strand, within EX28DRAFT_2117at 2136.958 kb on - strand, within EX28DRAFT_2117at 2136.958 kb on - strand, within EX28DRAFT_2117at 2136.976 kb on + strand, within EX28DRAFT_2117at 2137.303 kb on - strand, within EX28DRAFT_2117at 2137.303 kb on - strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.322 kb on - strand, within EX28DRAFT_2117at 2137.322 kb on - strand, within EX28DRAFT_2117at 2137.333 kb on + strand, within EX28DRAFT_2117at 2137.333 kb on + strand, within EX28DRAFT_2117at 2137.334 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.541 kb on - strand, within EX28DRAFT_2117at 2137.655 kb on - strandat 2137.658 kb on - strandat 2137.721 kb on + strandat 2137.742 kb on - strandat 2137.742 kb on - strandat 2137.742 kb on - strandat 2137.756 kb on - strandat 2137.775 kb on - strandat 2137.998 kb on + strand, within EX28DRAFT_2118at 2138.007 kb on + strand, within EX28DRAFT_2118at 2138.226 kb on - strandat 2138.269 kb on + strandat 2138.269 kb on + strandat 2138.270 kb on - strandat 2138.270 kb on - strandat 2138.270 kb on - strandat 2138.270 kb on - strandat 2138.282 kb on + strandat 2138.532 kb on + strand, within EX28DRAFT_2119at 2138.536 kb on + strand, within EX28DRAFT_2119at 2138.537 kb on - strand, within EX28DRAFT_2119at 2138.537 kb on - strand, within EX28DRAFT_2119at 2138.537 kb on - strand, within EX28DRAFT_2119at 2138.560 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.698 kb on - strand, within EX28DRAFT_2119at 2138.698 kb on - strand, within EX28DRAFT_2119at 2138.701 kb on + strand, within EX28DRAFT_2119at 2138.701 kb on + strand, within EX28DRAFT_2119at 2138.701 kb on + strand, within EX28DRAFT_2119

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,135,668 + EX28DRAFT_2115 0.51 +2.2
2,135,726 + EX28DRAFT_2115 0.66 +1.3
2,135,809 - EX28DRAFT_2115 0.87 +1.2
2,135,811 - EX28DRAFT_2115 0.87 +1.5
2,135,822 + +2.5
2,135,822 + +2.0
2,135,868 + +2.3
2,135,869 - +2.2
2,135,939 - +3.2
2,135,979 - +3.4
2,135,979 - +2.7
2,135,982 + +4.6
2,135,983 - +3.7
2,136,006 + +3.7
2,136,024 + +0.8
2,136,024 + +0.4
2,136,049 + -1.8
2,136,387 - -4.2
2,136,439 - -2.9
2,136,440 + -1.9
2,136,440 + -1.8
2,136,441 - -2.8
2,136,588 + EX28DRAFT_2117 0.10 -4.2
2,136,590 + EX28DRAFT_2117 0.11 -4.0
2,136,590 + EX28DRAFT_2117 0.11 -4.7
2,136,606 + EX28DRAFT_2117 0.12 -4.1
2,136,650 + EX28DRAFT_2117 0.15 -1.3
2,136,650 + EX28DRAFT_2117 0.15 -4.6
2,136,651 - EX28DRAFT_2117 0.15 -2.9
2,136,738 + EX28DRAFT_2117 0.22 -2.3
2,136,738 + EX28DRAFT_2117 0.22 -3.7
2,136,739 - EX28DRAFT_2117 0.22 -2.1
2,136,742 + EX28DRAFT_2117 0.22 -2.8
2,136,742 + EX28DRAFT_2117 0.22 -3.6
2,136,743 - EX28DRAFT_2117 0.22 -3.2
2,136,745 - EX28DRAFT_2117 0.23 -4.5
2,136,745 - EX28DRAFT_2117 0.23 -3.0
2,136,888 + EX28DRAFT_2117 0.34 -5.2
2,136,957 + EX28DRAFT_2117 0.39 -3.8
2,136,958 - EX28DRAFT_2117 0.39 -5.0
2,136,958 - EX28DRAFT_2117 0.39 -5.2
2,136,976 + EX28DRAFT_2117 0.40 -2.8
2,137,303 - EX28DRAFT_2117 0.66 -0.1
2,137,303 - EX28DRAFT_2117 0.66 -1.8
2,137,321 + EX28DRAFT_2117 0.67 -3.9
2,137,321 + EX28DRAFT_2117 0.67 -3.8
2,137,321 + EX28DRAFT_2117 0.67 -3.3
2,137,321 + EX28DRAFT_2117 0.67 -4.4
2,137,321 + EX28DRAFT_2117 0.67 -0.1
2,137,322 - EX28DRAFT_2117 0.67 -1.6
2,137,322 - EX28DRAFT_2117 0.67 -3.6
2,137,333 + EX28DRAFT_2117 0.68 -4.5
2,137,333 + EX28DRAFT_2117 0.68 -3.5
2,137,334 - EX28DRAFT_2117 0.68 -5.2
2,137,465 - EX28DRAFT_2117 0.78 -4.2
2,137,465 - EX28DRAFT_2117 0.78 -2.1
2,137,465 - EX28DRAFT_2117 0.78 -5.0
2,137,465 - EX28DRAFT_2117 0.78 -0.7
2,137,541 - EX28DRAFT_2117 0.84 -2.8
2,137,655 - -1.9
2,137,658 - -2.6
2,137,721 + -4.4
2,137,742 - -1.4
2,137,742 - -3.5
2,137,742 - -5.3
2,137,756 - -2.9
2,137,775 - -1.6
2,137,998 + EX28DRAFT_2118 0.56 -4.2
2,138,007 + EX28DRAFT_2118 0.58 -2.7
2,138,226 - -1.6
2,138,269 + -0.9
2,138,269 + -0.9
2,138,270 - -2.0
2,138,270 - -0.6
2,138,270 - -0.7
2,138,270 - -2.6
2,138,282 + -0.6
2,138,532 + EX28DRAFT_2119 0.29 -3.0
2,138,536 + EX28DRAFT_2119 0.30 -0.5
2,138,537 - EX28DRAFT_2119 0.30 -0.1
2,138,537 - EX28DRAFT_2119 0.30 +0.4
2,138,537 - EX28DRAFT_2119 0.30 +0.3
2,138,560 + EX28DRAFT_2119 0.33 +0.0
2,138,697 + EX28DRAFT_2119 0.51 -0.5
2,138,697 + EX28DRAFT_2119 0.51 +0.5
2,138,697 + EX28DRAFT_2119 0.51 +0.0
2,138,697 + EX28DRAFT_2119 0.51 +1.0
2,138,698 - EX28DRAFT_2119 0.51 -0.5
2,138,698 - EX28DRAFT_2119 0.51 +0.1
2,138,701 + EX28DRAFT_2119 0.51 -0.4
2,138,701 + EX28DRAFT_2119 0.51 +0.3
2,138,701 + EX28DRAFT_2119 0.51 -0.1

Or see this region's nucleotide sequence