Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2047 and EX28DRAFT_2048 are separated by 284 nucleotides EX28DRAFT_2048 and EX28DRAFT_2049 are separated by 71 nucleotides EX28DRAFT_2049 and EX28DRAFT_2050 are separated by 523 nucleotides
EX28DRAFT_2047: EX28DRAFT_2047 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,068,065 to 2,068,769
_2047
EX28DRAFT_2048: EX28DRAFT_2048 - bacterial translation initiation factor 1 (bIF-1), at 2,069,054 to 2,069,272
_2048
EX28DRAFT_2049: EX28DRAFT_2049 - hypothetical protein, at 2,069,344 to 2,069,790
_2049
EX28DRAFT_2050: EX28DRAFT_2050 - ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92), at 2,070,314 to 2,072,593
_2050
Position (kb)
2069
2070 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2068.497 kb on + strand, within EX28DRAFT_2047 at 2068.800 kb on + strand at 2068.801 kb on - strand at 2068.802 kb on + strand at 2068.802 kb on + strand at 2068.802 kb on + strand at 2068.803 kb on - strand at 2068.803 kb on - strand at 2068.803 kb on - strand at 2068.806 kb on + strand at 2068.881 kb on - strand at 2068.925 kb on - strand at 2069.300 kb on + strand at 2069.304 kb on + strand at 2069.304 kb on + strand at 2069.334 kb on - strand at 2069.368 kb on + strand at 2069.368 kb on + strand at 2069.368 kb on + strand at 2069.369 kb on - strand at 2069.369 kb on - strand at 2069.369 kb on - strand at 2069.369 kb on - strand at 2069.387 kb on - strand at 2069.412 kb on + strand, within EX28DRAFT_2049 at 2069.412 kb on + strand, within EX28DRAFT_2049 at 2069.458 kb on - strand, within EX28DRAFT_2049 at 2069.458 kb on - strand, within EX28DRAFT_2049 at 2069.637 kb on - strand, within EX28DRAFT_2049 at 2069.761 kb on - strand at 2069.762 kb on + strand at 2069.781 kb on + strand at 2069.781 kb on + strand at 2069.980 kb on + strand at 2069.981 kb on - strand at 2069.981 kb on - strand at 2069.989 kb on + strand at 2069.989 kb on + strand at 2069.989 kb on + strand at 2069.990 kb on - strand at 2069.990 kb on - strand at 2069.996 kb on - strand at 2070.012 kb on - strand at 2070.064 kb on + strand at 2070.254 kb on + strand at 2070.255 kb on - strand at 2070.308 kb on + strand at 2070.309 kb on - strand at 2070.360 kb on + strand at 2070.649 kb on + strand, within EX28DRAFT_2050 at 2070.649 kb on + strand, within EX28DRAFT_2050 at 2070.650 kb on - strand, within EX28DRAFT_2050 at 2070.650 kb on - strand, within EX28DRAFT_2050 at 2070.749 kb on - strand, within EX28DRAFT_2050
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,068,497 + EX28DRAFT_2047 0.61 +0.3 2,068,800 + -0.2 2,068,801 - +0.1 2,068,802 + -0.4 2,068,802 + -0.2 2,068,802 + -1.5 2,068,803 - -0.9 2,068,803 - +0.4 2,068,803 - -0.4 2,068,806 + -0.0 2,068,881 - -0.2 2,068,925 - -0.6 2,069,300 + +1.5 2,069,304 + +0.0 2,069,304 + +0.2 2,069,334 - +0.1 2,069,368 + -0.9 2,069,368 + +0.8 2,069,368 + -0.3 2,069,369 - +0.6 2,069,369 - +0.8 2,069,369 - -0.3 2,069,369 - +0.4 2,069,387 - +0.1 2,069,412 + EX28DRAFT_2049 0.15 +0.8 2,069,412 + EX28DRAFT_2049 0.15 +1.2 2,069,458 - EX28DRAFT_2049 0.26 -0.3 2,069,458 - EX28DRAFT_2049 0.26 +0.8 2,069,637 - EX28DRAFT_2049 0.66 +0.4 2,069,761 - +0.3 2,069,762 + +0.2 2,069,781 + -0.6 2,069,781 + +0.1 2,069,980 + +0.8 2,069,981 - +0.1 2,069,981 - -0.5 2,069,989 + -0.3 2,069,989 + +0.9 2,069,989 + +1.9 2,069,990 - +0.2 2,069,990 - -0.2 2,069,996 - +1.0 2,070,012 - +1.3 2,070,064 + +0.2 2,070,254 + +0.3 2,070,255 - -0.8 2,070,308 + -1.5 2,070,309 - -1.0 2,070,360 + -3.3 2,070,649 + EX28DRAFT_2050 0.15 -3.6 2,070,649 + EX28DRAFT_2050 0.15 -2.8 2,070,650 - EX28DRAFT_2050 0.15 -2.6 2,070,650 - EX28DRAFT_2050 0.15 -3.8 2,070,749 - EX28DRAFT_2050 0.19 -2.6
Or see this region's nucleotide sequence