Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1892

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1889 and EX28DRAFT_1890 are separated by 4 nucleotidesEX28DRAFT_1890 and EX28DRAFT_1891 are separated by 23 nucleotidesEX28DRAFT_1891 and EX28DRAFT_1892 are separated by 26 nucleotidesEX28DRAFT_1892 and EX28DRAFT_1893 are separated by 43 nucleotidesEX28DRAFT_1893 and EX28DRAFT_1894 are separated by 90 nucleotides EX28DRAFT_1889: EX28DRAFT_1889 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,900,804 to 1,901,454 _1889 EX28DRAFT_1890: EX28DRAFT_1890 - Curli assembly protein CsgE, at 1,901,459 to 1,901,848 _1890 EX28DRAFT_1891: EX28DRAFT_1891 - Type VIII secretion system (T8SS), CsgF protein, at 1,901,872 to 1,902,285 _1891 EX28DRAFT_1892: EX28DRAFT_1892 - Uncharacterized protein involved in formation of curli polymers, at 1,902,312 to 1,903,145 _1892 EX28DRAFT_1893: EX28DRAFT_1893 - Protein of unknown function (DUF1097), at 1,903,189 to 1,903,680 _1893 EX28DRAFT_1894: EX28DRAFT_1894 - Uncharacterized component of anaerobic dehydrogenases, at 1,903,771 to 1,904,322 _1894 Position (kb) 1902 1903 1904Strain fitness (log2 ratio) -3 -2 -1 0 1at 1901.378 kb on - strand, within EX28DRAFT_1889at 1901.618 kb on - strand, within EX28DRAFT_1890at 1901.618 kb on - strand, within EX28DRAFT_1890at 1901.618 kb on - strand, within EX28DRAFT_1890at 1901.621 kb on + strand, within EX28DRAFT_1890at 1901.622 kb on - strand, within EX28DRAFT_1890at 1901.622 kb on - strand, within EX28DRAFT_1890at 1901.623 kb on + strand, within EX28DRAFT_1890at 1901.633 kb on - strand, within EX28DRAFT_1890at 1901.633 kb on - strand, within EX28DRAFT_1890at 1901.634 kb on + strand, within EX28DRAFT_1890at 1901.635 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.702 kb on - strand, within EX28DRAFT_1890at 1901.706 kb on - strand, within EX28DRAFT_1890at 1901.733 kb on + strand, within EX28DRAFT_1890at 1901.799 kb on + strand, within EX28DRAFT_1890at 1901.814 kb on + strandat 1901.815 kb on - strandat 1901.815 kb on - strandat 1901.847 kb on - strandat 1901.885 kb on - strandat 1901.885 kb on - strandat 1901.885 kb on - strandat 1901.980 kb on - strand, within EX28DRAFT_1891at 1902.039 kb on - strand, within EX28DRAFT_1891at 1902.130 kb on - strand, within EX28DRAFT_1891at 1902.290 kb on + strandat 1902.294 kb on + strandat 1902.294 kb on + strandat 1902.294 kb on + strandat 1902.295 kb on - strandat 1902.295 kb on - strandat 1902.329 kb on - strandat 1902.329 kb on - strandat 1902.347 kb on - strandat 1902.361 kb on + strandat 1902.374 kb on + strandat 1902.374 kb on + strandat 1902.374 kb on + strandat 1902.392 kb on + strandat 1902.398 kb on - strand, within EX28DRAFT_1892at 1902.457 kb on + strand, within EX28DRAFT_1892at 1902.472 kb on - strand, within EX28DRAFT_1892at 1902.472 kb on - strand, within EX28DRAFT_1892at 1902.519 kb on - strand, within EX28DRAFT_1892at 1902.665 kb on + strand, within EX28DRAFT_1892at 1902.857 kb on + strand, within EX28DRAFT_1892at 1903.033 kb on - strand, within EX28DRAFT_1892at 1903.036 kb on + strand, within EX28DRAFT_1892at 1903.037 kb on - strand, within EX28DRAFT_1892at 1903.049 kb on + strand, within EX28DRAFT_1892at 1903.051 kb on + strand, within EX28DRAFT_1892at 1903.051 kb on + strand, within EX28DRAFT_1892at 1903.052 kb on - strand, within EX28DRAFT_1892at 1903.175 kb on + strandat 1903.244 kb on - strand, within EX28DRAFT_1893at 1903.301 kb on - strand, within EX28DRAFT_1893at 1903.347 kb on + strand, within EX28DRAFT_1893at 1903.428 kb on - strand, within EX28DRAFT_1893at 1903.489 kb on - strand, within EX28DRAFT_1893at 1903.518 kb on + strand, within EX28DRAFT_1893at 1903.519 kb on - strand, within EX28DRAFT_1893at 1903.660 kb on + strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.663 kb on + strandat 1903.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,901,378 - EX28DRAFT_1889 0.88 +0.6
1,901,618 - EX28DRAFT_1890 0.41 -0.7
1,901,618 - EX28DRAFT_1890 0.41 -0.4
1,901,618 - EX28DRAFT_1890 0.41 -0.1
1,901,621 + EX28DRAFT_1890 0.42 -0.2
1,901,622 - EX28DRAFT_1890 0.42 +0.8
1,901,622 - EX28DRAFT_1890 0.42 +0.5
1,901,623 + EX28DRAFT_1890 0.42 +0.6
1,901,633 - EX28DRAFT_1890 0.45 +0.2
1,901,633 - EX28DRAFT_1890 0.45 +0.1
1,901,634 + EX28DRAFT_1890 0.45 -0.8
1,901,635 - EX28DRAFT_1890 0.45 +0.7
1,901,702 - EX28DRAFT_1890 0.62 -0.4
1,901,702 - EX28DRAFT_1890 0.62 -0.0
1,901,702 - EX28DRAFT_1890 0.62 -0.2
1,901,702 - EX28DRAFT_1890 0.62 -1.0
1,901,706 - EX28DRAFT_1890 0.63 -0.1
1,901,733 + EX28DRAFT_1890 0.70 +1.0
1,901,799 + EX28DRAFT_1890 0.87 -0.2
1,901,814 + -0.9
1,901,815 - +0.0
1,901,815 - +0.7
1,901,847 - +0.4
1,901,885 - +0.5
1,901,885 - -0.9
1,901,885 - -0.5
1,901,980 - EX28DRAFT_1891 0.26 -0.1
1,902,039 - EX28DRAFT_1891 0.40 +0.3
1,902,130 - EX28DRAFT_1891 0.62 -3.7
1,902,290 + -0.3
1,902,294 + -3.2
1,902,294 + +0.3
1,902,294 + -0.4
1,902,295 - -0.6
1,902,295 - -1.4
1,902,329 - +0.5
1,902,329 - -0.9
1,902,347 - -0.9
1,902,361 + -0.3
1,902,374 + -0.4
1,902,374 + +0.7
1,902,374 + -0.3
1,902,392 + -0.1
1,902,398 - EX28DRAFT_1892 0.10 -0.8
1,902,457 + EX28DRAFT_1892 0.17 +0.9
1,902,472 - EX28DRAFT_1892 0.19 +0.4
1,902,472 - EX28DRAFT_1892 0.19 -0.2
1,902,519 - EX28DRAFT_1892 0.25 -0.2
1,902,665 + EX28DRAFT_1892 0.42 +0.2
1,902,857 + EX28DRAFT_1892 0.65 -0.5
1,903,033 - EX28DRAFT_1892 0.86 +0.9
1,903,036 + EX28DRAFT_1892 0.87 +1.6
1,903,037 - EX28DRAFT_1892 0.87 +1.2
1,903,049 + EX28DRAFT_1892 0.88 +1.1
1,903,051 + EX28DRAFT_1892 0.89 +1.2
1,903,051 + EX28DRAFT_1892 0.89 +0.7
1,903,052 - EX28DRAFT_1892 0.89 +0.2
1,903,175 + -0.6
1,903,244 - EX28DRAFT_1893 0.11 -1.5
1,903,301 - EX28DRAFT_1893 0.23 -0.0
1,903,347 + EX28DRAFT_1893 0.32 +1.1
1,903,428 - EX28DRAFT_1893 0.49 -0.2
1,903,489 - EX28DRAFT_1893 0.61 +0.3
1,903,518 + EX28DRAFT_1893 0.67 +0.9
1,903,519 - EX28DRAFT_1893 0.67 -0.1
1,903,660 + -1.4
1,903,661 - +0.5
1,903,661 - -1.2
1,903,661 - +0.6
1,903,661 - -1.1
1,903,661 - -0.0
1,903,661 - +0.5
1,903,663 + -0.1
1,903,684 - +0.1

Or see this region's nucleotide sequence