Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1827

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1825 and EX28DRAFT_1826 are separated by 10 nucleotidesEX28DRAFT_1826 and EX28DRAFT_1827 are separated by 1 nucleotidesEX28DRAFT_1827 and EX28DRAFT_1828 are separated by 247 nucleotides EX28DRAFT_1825: EX28DRAFT_1825 - uncharacterized proteobacterial lipoprotein, at 1,843,542 to 1,844,189 _1825 EX28DRAFT_1826: EX28DRAFT_1826 - Predicted periplasmic lipoprotein, at 1,844,200 to 1,844,574 _1826 EX28DRAFT_1827: EX28DRAFT_1827 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,844,576 to 1,844,935 _1827 EX28DRAFT_1828: EX28DRAFT_1828 - PTS system, glucose-specific IIBC component, at 1,845,183 to 1,846,616 _1828 Position (kb) 1844 1845Strain fitness (log2 ratio) -2 -1 0 1at 1843.660 kb on + strand, within EX28DRAFT_1825at 1843.660 kb on + strand, within EX28DRAFT_1825at 1843.676 kb on + strand, within EX28DRAFT_1825at 1843.778 kb on + strand, within EX28DRAFT_1825at 1844.207 kb on + strandat 1844.226 kb on + strandat 1844.227 kb on - strandat 1844.241 kb on - strand, within EX28DRAFT_1826at 1844.241 kb on - strand, within EX28DRAFT_1826at 1844.329 kb on + strand, within EX28DRAFT_1826at 1844.330 kb on - strand, within EX28DRAFT_1826at 1844.545 kb on + strandat 1844.587 kb on + strandat 1844.587 kb on + strandat 1844.588 kb on - strandat 1844.588 kb on - strandat 1844.588 kb on - strandat 1844.638 kb on + strand, within EX28DRAFT_1827at 1844.743 kb on + strand, within EX28DRAFT_1827at 1844.743 kb on + strand, within EX28DRAFT_1827at 1844.743 kb on + strand, within EX28DRAFT_1827at 1844.784 kb on - strand, within EX28DRAFT_1827at 1844.784 kb on - strand, within EX28DRAFT_1827at 1844.874 kb on + strand, within EX28DRAFT_1827at 1844.980 kb on - strandat 1845.020 kb on + strandat 1845.137 kb on + strandat 1845.164 kb on - strandat 1845.164 kb on - strandat 1845.184 kb on + strandat 1845.184 kb on + strandat 1845.184 kb on + strandat 1845.199 kb on + strandat 1845.252 kb on + strandat 1845.274 kb on - strandat 1845.312 kb on + strandat 1845.369 kb on - strand, within EX28DRAFT_1828at 1845.489 kb on - strand, within EX28DRAFT_1828at 1845.511 kb on + strand, within EX28DRAFT_1828at 1845.512 kb on - strand, within EX28DRAFT_1828at 1845.512 kb on - strand, within EX28DRAFT_1828at 1845.514 kb on + strand, within EX28DRAFT_1828at 1845.527 kb on - strand, within EX28DRAFT_1828at 1845.527 kb on - strand, within EX28DRAFT_1828at 1845.614 kb on + strand, within EX28DRAFT_1828at 1845.682 kb on + strand, within EX28DRAFT_1828at 1845.682 kb on + strand, within EX28DRAFT_1828at 1845.683 kb on - strand, within EX28DRAFT_1828at 1845.683 kb on - strand, within EX28DRAFT_1828at 1845.801 kb on - strand, within EX28DRAFT_1828at 1845.841 kb on + strand, within EX28DRAFT_1828at 1845.896 kb on + strand, within EX28DRAFT_1828at 1845.897 kb on - strand, within EX28DRAFT_1828at 1845.898 kb on + strand, within EX28DRAFT_1828at 1845.898 kb on + strand, within EX28DRAFT_1828at 1845.899 kb on - strand, within EX28DRAFT_1828at 1845.899 kb on - strand, within EX28DRAFT_1828at 1845.899 kb on - strand, within EX28DRAFT_1828at 1845.921 kb on + strand, within EX28DRAFT_1828

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,843,660 + EX28DRAFT_1825 0.18 -0.0
1,843,660 + EX28DRAFT_1825 0.18 -0.5
1,843,676 + EX28DRAFT_1825 0.21 -0.5
1,843,778 + EX28DRAFT_1825 0.36 -0.1
1,844,207 + +0.3
1,844,226 + -0.5
1,844,227 - +0.1
1,844,241 - EX28DRAFT_1826 0.11 -0.0
1,844,241 - EX28DRAFT_1826 0.11 -0.3
1,844,329 + EX28DRAFT_1826 0.34 +0.8
1,844,330 - EX28DRAFT_1826 0.35 -0.4
1,844,545 + -0.8
1,844,587 + -0.0
1,844,587 + -1.9
1,844,588 - +0.1
1,844,588 - +1.4
1,844,588 - -1.5
1,844,638 + EX28DRAFT_1827 0.17 -0.9
1,844,743 + EX28DRAFT_1827 0.46 -1.6
1,844,743 + EX28DRAFT_1827 0.46 -1.5
1,844,743 + EX28DRAFT_1827 0.46 -0.8
1,844,784 - EX28DRAFT_1827 0.58 -1.3
1,844,784 - EX28DRAFT_1827 0.58 -1.1
1,844,874 + EX28DRAFT_1827 0.83 -2.7
1,844,980 - -1.0
1,845,020 + -1.9
1,845,137 + +0.1
1,845,164 - +0.8
1,845,164 - -0.8
1,845,184 + -1.3
1,845,184 + +1.0
1,845,184 + +0.6
1,845,199 + -0.1
1,845,252 + +0.6
1,845,274 - +0.0
1,845,312 + +1.2
1,845,369 - EX28DRAFT_1828 0.13 +0.3
1,845,489 - EX28DRAFT_1828 0.21 +0.6
1,845,511 + EX28DRAFT_1828 0.23 +0.5
1,845,512 - EX28DRAFT_1828 0.23 +0.0
1,845,512 - EX28DRAFT_1828 0.23 +0.7
1,845,514 + EX28DRAFT_1828 0.23 -0.1
1,845,527 - EX28DRAFT_1828 0.24 -0.3
1,845,527 - EX28DRAFT_1828 0.24 +1.1
1,845,614 + EX28DRAFT_1828 0.30 -0.1
1,845,682 + EX28DRAFT_1828 0.35 +0.9
1,845,682 + EX28DRAFT_1828 0.35 +0.5
1,845,683 - EX28DRAFT_1828 0.35 +0.4
1,845,683 - EX28DRAFT_1828 0.35 -0.1
1,845,801 - EX28DRAFT_1828 0.43 +0.5
1,845,841 + EX28DRAFT_1828 0.46 +1.0
1,845,896 + EX28DRAFT_1828 0.50 +0.5
1,845,897 - EX28DRAFT_1828 0.50 -0.5
1,845,898 + EX28DRAFT_1828 0.50 +0.3
1,845,898 + EX28DRAFT_1828 0.50 +0.4
1,845,899 - EX28DRAFT_1828 0.50 +0.7
1,845,899 - EX28DRAFT_1828 0.50 -0.0
1,845,899 - EX28DRAFT_1828 0.50 +0.4
1,845,921 + EX28DRAFT_1828 0.51 +0.7

Or see this region's nucleotide sequence