Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1819 and EX28DRAFT_1820 are separated by 59 nucleotides EX28DRAFT_1820 and EX28DRAFT_1821 are separated by 193 nucleotides EX28DRAFT_1821 and EX28DRAFT_1822 are separated by 238 nucleotides EX28DRAFT_1822 and EX28DRAFT_1823 are separated by 34 nucleotides
EX28DRAFT_1819: EX28DRAFT_1819 - transcriptional regulator, TetR family, at 1,838,152 to 1,838,787
_1819
EX28DRAFT_1820: EX28DRAFT_1820 - Predicted outer membrane lipoprotein, at 1,838,847 to 1,839,386
_1820
EX28DRAFT_1821: EX28DRAFT_1821 - NADH dehydrogenase, FAD-containing subunit, at 1,839,580 to 1,840,884
_1821
EX28DRAFT_1822: EX28DRAFT_1822 - Predicted esterase, at 1,841,123 to 1,841,665
_1822
EX28DRAFT_1823: EX28DRAFT_1823 - Beta-glucosidase-related glycosidases, at 1,841,700 to 1,842,731
_1823
Position (kb)
1839
1840
1841 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1838.668 kb on + strand, within EX28DRAFT_1819 at 1838.740 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.858 kb on + strand at 1838.989 kb on + strand, within EX28DRAFT_1820 at 1839.022 kb on + strand, within EX28DRAFT_1820 at 1839.023 kb on - strand, within EX28DRAFT_1820 at 1839.026 kb on + strand, within EX28DRAFT_1820 at 1839.100 kb on - strand, within EX28DRAFT_1820 at 1839.286 kb on + strand, within EX28DRAFT_1820 at 1839.287 kb on - strand, within EX28DRAFT_1820 at 1839.303 kb on + strand, within EX28DRAFT_1820 at 1839.306 kb on + strand, within EX28DRAFT_1820 at 1839.361 kb on - strand at 1839.361 kb on - strand at 1839.484 kb on + strand at 1839.484 kb on + strand at 1839.485 kb on - strand at 1839.485 kb on - strand at 1839.486 kb on + strand at 1839.486 kb on + strand at 1839.492 kb on - strand at 1839.495 kb on + strand at 1839.495 kb on + strand at 1839.495 kb on + strand at 1839.507 kb on + strand at 1839.507 kb on + strand at 1839.654 kb on - strand at 1839.693 kb on + strand at 1839.695 kb on + strand at 1839.695 kb on + strand at 1839.695 kb on + strand at 1839.696 kb on - strand at 1839.696 kb on - strand at 1839.721 kb on + strand, within EX28DRAFT_1821 at 1839.722 kb on - strand, within EX28DRAFT_1821 at 1839.722 kb on - strand, within EX28DRAFT_1821 at 1839.809 kb on + strand, within EX28DRAFT_1821 at 1839.816 kb on - strand, within EX28DRAFT_1821 at 1839.816 kb on - strand, within EX28DRAFT_1821 at 1839.816 kb on - strand, within EX28DRAFT_1821 at 1839.839 kb on + strand, within EX28DRAFT_1821 at 1840.041 kb on + strand, within EX28DRAFT_1821 at 1840.093 kb on - strand, within EX28DRAFT_1821 at 1840.095 kb on - strand, within EX28DRAFT_1821 at 1840.273 kb on + strand, within EX28DRAFT_1821 at 1840.371 kb on + strand, within EX28DRAFT_1821 at 1840.404 kb on - strand, within EX28DRAFT_1821 at 1840.822 kb on - strand at 1841.024 kb on + strand at 1841.024 kb on + strand at 1841.118 kb on + strand at 1841.119 kb on - strand at 1841.215 kb on - strand, within EX28DRAFT_1822 at 1841.218 kb on - strand, within EX28DRAFT_1822 at 1841.218 kb on - strand, within EX28DRAFT_1822 at 1841.218 kb on - strand, within EX28DRAFT_1822 at 1841.266 kb on + strand, within EX28DRAFT_1822 at 1841.266 kb on + strand, within EX28DRAFT_1822 at 1841.266 kb on + strand, within EX28DRAFT_1822 at 1841.267 kb on - strand, within EX28DRAFT_1822 at 1841.343 kb on + strand, within EX28DRAFT_1822 at 1841.343 kb on + strand, within EX28DRAFT_1822 at 1841.343 kb on + strand, within EX28DRAFT_1822 at 1841.343 kb on + strand, within EX28DRAFT_1822 at 1841.344 kb on - strand, within EX28DRAFT_1822 at 1841.344 kb on - strand, within EX28DRAFT_1822 at 1841.344 kb on - strand, within EX28DRAFT_1822 at 1841.540 kb on - strand, within EX28DRAFT_1822 at 1841.565 kb on + strand, within EX28DRAFT_1822 at 1841.580 kb on - strand, within EX28DRAFT_1822 at 1841.655 kb on + strand at 1841.655 kb on + strand at 1841.701 kb on + strand at 1841.714 kb on + strand at 1841.714 kb on + strand at 1841.715 kb on - strand at 1841.816 kb on - strand, within EX28DRAFT_1823
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,838,668 + EX28DRAFT_1819 0.81 -0.5 1,838,740 - +0.2 1,838,827 - +0.0 1,838,827 - -0.8 1,838,827 - -0.2 1,838,827 - -0.2 1,838,858 + -0.3 1,838,989 + EX28DRAFT_1820 0.26 +0.3 1,839,022 + EX28DRAFT_1820 0.32 +0.5 1,839,023 - EX28DRAFT_1820 0.33 -2.5 1,839,026 + EX28DRAFT_1820 0.33 -0.4 1,839,100 - EX28DRAFT_1820 0.47 +0.3 1,839,286 + EX28DRAFT_1820 0.81 +0.3 1,839,287 - EX28DRAFT_1820 0.81 -0.7 1,839,303 + EX28DRAFT_1820 0.84 -0.2 1,839,306 + EX28DRAFT_1820 0.85 +0.3 1,839,361 - -0.7 1,839,361 - +0.0 1,839,484 + +0.4 1,839,484 + +0.5 1,839,485 - -0.1 1,839,485 - +0.4 1,839,486 + -1.5 1,839,486 + +0.3 1,839,492 - +0.2 1,839,495 + -0.4 1,839,495 + +0.3 1,839,495 + -0.0 1,839,507 + -0.2 1,839,507 + +0.7 1,839,654 - -1.7 1,839,693 + -1.4 1,839,695 + -2.3 1,839,695 + -1.0 1,839,695 + -1.0 1,839,696 - -1.6 1,839,696 - -1.0 1,839,721 + EX28DRAFT_1821 0.11 -0.9 1,839,722 - EX28DRAFT_1821 0.11 +0.9 1,839,722 - EX28DRAFT_1821 0.11 -2.3 1,839,809 + EX28DRAFT_1821 0.18 -1.1 1,839,816 - EX28DRAFT_1821 0.18 -0.7 1,839,816 - EX28DRAFT_1821 0.18 -1.4 1,839,816 - EX28DRAFT_1821 0.18 -0.9 1,839,839 + EX28DRAFT_1821 0.20 +0.1 1,840,041 + EX28DRAFT_1821 0.35 -2.3 1,840,093 - EX28DRAFT_1821 0.39 -1.1 1,840,095 - EX28DRAFT_1821 0.39 -0.4 1,840,273 + EX28DRAFT_1821 0.53 +0.5 1,840,371 + EX28DRAFT_1821 0.61 -0.8 1,840,404 - EX28DRAFT_1821 0.63 -0.9 1,840,822 - -0.8 1,841,024 + -0.9 1,841,024 + +0.1 1,841,118 + -1.4 1,841,119 - +0.6 1,841,215 - EX28DRAFT_1822 0.17 +0.2 1,841,218 - EX28DRAFT_1822 0.17 +0.2 1,841,218 - EX28DRAFT_1822 0.17 +0.2 1,841,218 - EX28DRAFT_1822 0.17 +1.5 1,841,266 + EX28DRAFT_1822 0.26 +0.6 1,841,266 + EX28DRAFT_1822 0.26 +0.1 1,841,266 + EX28DRAFT_1822 0.26 -0.8 1,841,267 - EX28DRAFT_1822 0.27 +0.1 1,841,343 + EX28DRAFT_1822 0.41 +1.2 1,841,343 + EX28DRAFT_1822 0.41 -0.3 1,841,343 + EX28DRAFT_1822 0.41 +2.3 1,841,343 + EX28DRAFT_1822 0.41 -0.1 1,841,344 - EX28DRAFT_1822 0.41 +0.1 1,841,344 - EX28DRAFT_1822 0.41 -0.5 1,841,344 - EX28DRAFT_1822 0.41 +0.2 1,841,540 - EX28DRAFT_1822 0.77 -0.1 1,841,565 + EX28DRAFT_1822 0.81 -0.4 1,841,580 - EX28DRAFT_1822 0.84 +0.3 1,841,655 + -0.4 1,841,655 + -0.6 1,841,701 + +0.1 1,841,714 + +0.1 1,841,714 + -0.2 1,841,715 - -0.2 1,841,816 - EX28DRAFT_1823 0.11 -1.0
Or see this region's nucleotide sequence