Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1719

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1718 and EX28DRAFT_1719 are separated by 103 nucleotidesEX28DRAFT_1719 and EX28DRAFT_1720 are separated by 4 nucleotides EX28DRAFT_1718: EX28DRAFT_1718 - ABC-type cobalamin transport system, permease component, at 1,733,859 to 1,734,839 _1718 EX28DRAFT_1719: EX28DRAFT_1719 - integration host factor, alpha subunit, at 1,734,943 to 1,735,242 _1719 EX28DRAFT_1720: EX28DRAFT_1720 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 1,735,247 to 1,737,634 _1720 Position (kb) 1734 1735 1736Strain fitness (log2 ratio) -3 -2 -1 0 1at 1733.967 kb on - strand, within EX28DRAFT_1718at 1734.126 kb on - strand, within EX28DRAFT_1718at 1734.126 kb on - strand, within EX28DRAFT_1718at 1734.129 kb on + strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.130 kb on - strand, within EX28DRAFT_1718at 1734.132 kb on + strand, within EX28DRAFT_1718at 1734.132 kb on + strand, within EX28DRAFT_1718at 1734.133 kb on - strand, within EX28DRAFT_1718at 1734.203 kb on + strand, within EX28DRAFT_1718at 1734.204 kb on - strand, within EX28DRAFT_1718at 1734.204 kb on - strand, within EX28DRAFT_1718at 1734.311 kb on - strand, within EX28DRAFT_1718at 1734.421 kb on - strand, within EX28DRAFT_1718at 1734.491 kb on + strand, within EX28DRAFT_1718at 1734.491 kb on + strand, within EX28DRAFT_1718at 1734.492 kb on - strand, within EX28DRAFT_1718at 1734.492 kb on - strand, within EX28DRAFT_1718at 1734.613 kb on - strand, within EX28DRAFT_1718at 1734.613 kb on - strand, within EX28DRAFT_1718at 1734.829 kb on + strandat 1734.866 kb on + strandat 1735.033 kb on - strand, within EX28DRAFT_1719at 1735.162 kb on + strand, within EX28DRAFT_1719at 1735.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,733,967 - EX28DRAFT_1718 0.11 +0.5
1,734,126 - EX28DRAFT_1718 0.27 -0.3
1,734,126 - EX28DRAFT_1718 0.27 -0.0
1,734,129 + EX28DRAFT_1718 0.28 +1.2
1,734,130 - EX28DRAFT_1718 0.28 -1.3
1,734,130 - EX28DRAFT_1718 0.28 -0.2
1,734,130 - EX28DRAFT_1718 0.28 +0.6
1,734,130 - EX28DRAFT_1718 0.28 -1.0
1,734,130 - EX28DRAFT_1718 0.28 +0.0
1,734,130 - EX28DRAFT_1718 0.28 +0.2
1,734,132 + EX28DRAFT_1718 0.28 +0.1
1,734,132 + EX28DRAFT_1718 0.28 -0.3
1,734,133 - EX28DRAFT_1718 0.28 -1.0
1,734,203 + EX28DRAFT_1718 0.35 +0.7
1,734,204 - EX28DRAFT_1718 0.35 -0.0
1,734,204 - EX28DRAFT_1718 0.35 -0.1
1,734,311 - EX28DRAFT_1718 0.46 -0.3
1,734,421 - EX28DRAFT_1718 0.57 +0.0
1,734,491 + EX28DRAFT_1718 0.64 +0.4
1,734,491 + EX28DRAFT_1718 0.64 -0.0
1,734,492 - EX28DRAFT_1718 0.65 -1.0
1,734,492 - EX28DRAFT_1718 0.65 +0.4
1,734,613 - EX28DRAFT_1718 0.77 -1.2
1,734,613 - EX28DRAFT_1718 0.77 +1.6
1,734,829 + +0.2
1,734,866 + -1.6
1,735,033 - EX28DRAFT_1719 0.30 -3.0
1,735,162 + EX28DRAFT_1719 0.73 -2.6
1,735,233 + -2.7

Or see this region's nucleotide sequence