Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1718 and EX28DRAFT_1719 are separated by 103 nucleotides EX28DRAFT_1719 and EX28DRAFT_1720 are separated by 4 nucleotides
EX28DRAFT_1718: EX28DRAFT_1718 - ABC-type cobalamin transport system, permease component, at 1,733,859 to 1,734,839
_1718
EX28DRAFT_1719: EX28DRAFT_1719 - integration host factor, alpha subunit, at 1,734,943 to 1,735,242
_1719
EX28DRAFT_1720: EX28DRAFT_1720 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 1,735,247 to 1,737,634
_1720
Position (kb)
1734
1735
1736 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1733.967 kb on - strand, within EX28DRAFT_1718 at 1734.126 kb on - strand, within EX28DRAFT_1718 at 1734.126 kb on - strand, within EX28DRAFT_1718 at 1734.129 kb on + strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.130 kb on - strand, within EX28DRAFT_1718 at 1734.132 kb on + strand, within EX28DRAFT_1718 at 1734.132 kb on + strand, within EX28DRAFT_1718 at 1734.133 kb on - strand, within EX28DRAFT_1718 at 1734.203 kb on + strand, within EX28DRAFT_1718 at 1734.204 kb on - strand, within EX28DRAFT_1718 at 1734.204 kb on - strand, within EX28DRAFT_1718 at 1734.311 kb on - strand, within EX28DRAFT_1718 at 1734.421 kb on - strand, within EX28DRAFT_1718 at 1734.491 kb on + strand, within EX28DRAFT_1718 at 1734.491 kb on + strand, within EX28DRAFT_1718 at 1734.492 kb on - strand, within EX28DRAFT_1718 at 1734.492 kb on - strand, within EX28DRAFT_1718 at 1734.613 kb on - strand, within EX28DRAFT_1718 at 1734.613 kb on - strand, within EX28DRAFT_1718 at 1734.829 kb on + strand at 1734.866 kb on + strand at 1735.033 kb on - strand, within EX28DRAFT_1719 at 1735.162 kb on + strand, within EX28DRAFT_1719 at 1735.233 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,733,967 - EX28DRAFT_1718 0.11 +0.5 1,734,126 - EX28DRAFT_1718 0.27 -0.3 1,734,126 - EX28DRAFT_1718 0.27 -0.0 1,734,129 + EX28DRAFT_1718 0.28 +1.2 1,734,130 - EX28DRAFT_1718 0.28 -1.3 1,734,130 - EX28DRAFT_1718 0.28 -0.2 1,734,130 - EX28DRAFT_1718 0.28 +0.6 1,734,130 - EX28DRAFT_1718 0.28 -1.0 1,734,130 - EX28DRAFT_1718 0.28 +0.0 1,734,130 - EX28DRAFT_1718 0.28 +0.2 1,734,132 + EX28DRAFT_1718 0.28 +0.1 1,734,132 + EX28DRAFT_1718 0.28 -0.3 1,734,133 - EX28DRAFT_1718 0.28 -1.0 1,734,203 + EX28DRAFT_1718 0.35 +0.7 1,734,204 - EX28DRAFT_1718 0.35 -0.0 1,734,204 - EX28DRAFT_1718 0.35 -0.1 1,734,311 - EX28DRAFT_1718 0.46 -0.3 1,734,421 - EX28DRAFT_1718 0.57 +0.0 1,734,491 + EX28DRAFT_1718 0.64 +0.4 1,734,491 + EX28DRAFT_1718 0.64 -0.0 1,734,492 - EX28DRAFT_1718 0.65 -1.0 1,734,492 - EX28DRAFT_1718 0.65 +0.4 1,734,613 - EX28DRAFT_1718 0.77 -1.2 1,734,613 - EX28DRAFT_1718 0.77 +1.6 1,734,829 + +0.2 1,734,866 + -1.6 1,735,033 - EX28DRAFT_1719 0.30 -3.0 1,735,162 + EX28DRAFT_1719 0.73 -2.6 1,735,233 + -2.7
Or see this region's nucleotide sequence