Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1684 and EX28DRAFT_1685 overlap by 26 nucleotides EX28DRAFT_1685 and EX28DRAFT_1686 are separated by 9 nucleotides EX28DRAFT_1686 and EX28DRAFT_1687 are separated by 8 nucleotides EX28DRAFT_1687 and EX28DRAFT_1688 are separated by 313 nucleotides
EX28DRAFT_1684: EX28DRAFT_1684 - FeS assembly protein SufD, at 1,696,439 to 1,697,710
_1684
EX28DRAFT_1685: EX28DRAFT_1685 - FeS assembly ATPase SufC, at 1,697,685 to 1,698,431
_1685
EX28DRAFT_1686: EX28DRAFT_1686 - FeS assembly protein SufB, at 1,698,441 to 1,699,931
_1686
EX28DRAFT_1687: EX28DRAFT_1687 - FeS assembly scaffold SufA, at 1,699,940 to 1,700,308
_1687
EX28DRAFT_1688: EX28DRAFT_1688 - MerR HTH family regulatory protein, at 1,700,622 to 1,701,350
_1688
Position (kb)
1698
1699
1700 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1697.558 kb on - strand, within EX28DRAFT_1684 at 1697.559 kb on + strand, within EX28DRAFT_1684 at 1697.579 kb on - strand, within EX28DRAFT_1684 at 1697.686 kb on + strand at 1697.687 kb on - strand at 1697.687 kb on - strand at 1697.700 kb on - strand at 1697.762 kb on + strand, within EX28DRAFT_1685 at 1697.762 kb on + strand, within EX28DRAFT_1685 at 1697.803 kb on + strand, within EX28DRAFT_1685 at 1697.803 kb on + strand, within EX28DRAFT_1685 at 1697.928 kb on + strand, within EX28DRAFT_1685 at 1697.928 kb on + strand, within EX28DRAFT_1685 at 1697.972 kb on + strand, within EX28DRAFT_1685 at 1698.275 kb on - strand, within EX28DRAFT_1685 at 1698.399 kb on + strand at 1698.427 kb on - strand at 1698.590 kb on - strand, within EX28DRAFT_1686 at 1698.667 kb on + strand, within EX28DRAFT_1686 at 1698.677 kb on + strand, within EX28DRAFT_1686 at 1698.678 kb on - strand, within EX28DRAFT_1686 at 1699.088 kb on - strand, within EX28DRAFT_1686 at 1699.088 kb on - strand, within EX28DRAFT_1686 at 1699.144 kb on + strand, within EX28DRAFT_1686 at 1699.258 kb on + strand, within EX28DRAFT_1686 at 1699.258 kb on + strand, within EX28DRAFT_1686 at 1699.300 kb on + strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.304 kb on + strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.381 kb on + strand, within EX28DRAFT_1686 at 1699.663 kb on + strand, within EX28DRAFT_1686 at 1699.664 kb on - strand, within EX28DRAFT_1686 at 1699.679 kb on - strand, within EX28DRAFT_1686 at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.871 kb on - strand at 1699.871 kb on - strand at 1699.871 kb on - strand at 1699.899 kb on + strand at 1699.899 kb on + strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.919 kb on + strand at 1699.920 kb on - strand at 1699.922 kb on + strand at 1699.931 kb on + strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.941 kb on + strand at 1699.942 kb on - strand at 1700.186 kb on + strand, within EX28DRAFT_1687 at 1700.227 kb on + strand, within EX28DRAFT_1687 at 1700.228 kb on - strand, within EX28DRAFT_1687 at 1700.326 kb on + strand at 1700.341 kb on + strand at 1700.420 kb on - strand at 1700.434 kb on + strand at 1700.435 kb on - strand at 1700.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,697,558 - EX28DRAFT_1684 0.88 -0.1 1,697,559 + EX28DRAFT_1684 0.88 -2.1 1,697,579 - EX28DRAFT_1684 0.90 -3.4 1,697,686 + -2.1 1,697,687 - -2.0 1,697,687 - -1.6 1,697,700 - -0.5 1,697,762 + EX28DRAFT_1685 0.10 +0.9 1,697,762 + EX28DRAFT_1685 0.10 -2.0 1,697,803 + EX28DRAFT_1685 0.16 -1.7 1,697,803 + EX28DRAFT_1685 0.16 +0.2 1,697,928 + EX28DRAFT_1685 0.33 -2.6 1,697,928 + EX28DRAFT_1685 0.33 -1.0 1,697,972 + EX28DRAFT_1685 0.38 +0.1 1,698,275 - EX28DRAFT_1685 0.79 -2.9 1,698,399 + -2.4 1,698,427 - -3.7 1,698,590 - EX28DRAFT_1686 0.10 -2.6 1,698,667 + EX28DRAFT_1686 0.15 -2.4 1,698,677 + EX28DRAFT_1686 0.16 -3.9 1,698,678 - EX28DRAFT_1686 0.16 -3.1 1,699,088 - EX28DRAFT_1686 0.43 -1.1 1,699,088 - EX28DRAFT_1686 0.43 -1.1 1,699,144 + EX28DRAFT_1686 0.47 -2.9 1,699,258 + EX28DRAFT_1686 0.55 -3.5 1,699,258 + EX28DRAFT_1686 0.55 -4.0 1,699,300 + EX28DRAFT_1686 0.58 -2.5 1,699,301 - EX28DRAFT_1686 0.58 -2.1 1,699,301 - EX28DRAFT_1686 0.58 -2.7 1,699,301 - EX28DRAFT_1686 0.58 -2.0 1,699,304 + EX28DRAFT_1686 0.58 -4.0 1,699,305 - EX28DRAFT_1686 0.58 -0.4 1,699,305 - EX28DRAFT_1686 0.58 -2.9 1,699,305 - EX28DRAFT_1686 0.58 -2.7 1,699,381 + EX28DRAFT_1686 0.63 -3.5 1,699,663 + EX28DRAFT_1686 0.82 -0.7 1,699,664 - EX28DRAFT_1686 0.82 +1.3 1,699,679 - EX28DRAFT_1686 0.83 -0.5 1,699,870 + -2.5 1,699,870 + -2.8 1,699,870 + -3.5 1,699,870 + -2.2 1,699,870 + -3.4 1,699,871 - -2.0 1,699,871 - -1.6 1,699,871 - -1.1 1,699,899 + -2.7 1,699,899 + -1.1 1,699,900 - -2.0 1,699,900 - -1.0 1,699,900 - -2.6 1,699,900 - -2.1 1,699,919 + -3.2 1,699,920 - -2.7 1,699,922 + -2.9 1,699,931 + -3.2 1,699,932 - -1.3 1,699,932 - -0.6 1,699,932 - -4.7 1,699,932 - -2.3 1,699,932 - -2.7 1,699,941 + -3.2 1,699,942 - -3.3 1,700,186 + EX28DRAFT_1687 0.67 -0.2 1,700,227 + EX28DRAFT_1687 0.78 -0.2 1,700,228 - EX28DRAFT_1687 0.78 +0.4 1,700,326 + -0.9 1,700,341 + -2.1 1,700,420 - +0.9 1,700,434 + -0.1 1,700,435 - +0.1 1,700,588 + +0.7
Or see this region's nucleotide sequence