Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1676 and EX28DRAFT_1677 are separated by 400 nucleotides EX28DRAFT_1677 and EX28DRAFT_1678 are separated by 11 nucleotides
EX28DRAFT_1676: EX28DRAFT_1676 - ABC-type metal ion transport system, ATPase component, at 1,687,324 to 1,688,346
_1676
EX28DRAFT_1677: EX28DRAFT_1677 - Cysteine synthase, at 1,688,747 to 1,690,117
_1677
EX28DRAFT_1678: EX28DRAFT_1678 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,690,129 to 1,691,274
_1678
Position (kb)
1688
1689
1690
1691 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1688.142 kb on + strand, within EX28DRAFT_1676 at 1688.238 kb on + strand, within EX28DRAFT_1676 at 1688.328 kb on + strand at 1688.329 kb on - strand at 1688.350 kb on + strand at 1688.351 kb on - strand at 1688.406 kb on + strand at 1688.497 kb on - strand at 1688.532 kb on + strand at 1688.615 kb on + strand at 1688.641 kb on + strand at 1688.651 kb on - strand at 1688.651 kb on - strand at 1688.653 kb on - strand at 1688.712 kb on - strand at 1688.712 kb on - strand at 1688.712 kb on - strand at 1688.756 kb on + strand at 1688.869 kb on + strand at 1688.869 kb on + strand at 1688.872 kb on + strand at 1688.873 kb on - strand at 1689.437 kb on - strand, within EX28DRAFT_1677 at 1689.452 kb on - strand, within EX28DRAFT_1677 at 1689.599 kb on + strand, within EX28DRAFT_1677 at 1689.600 kb on - strand, within EX28DRAFT_1677 at 1689.600 kb on - strand, within EX28DRAFT_1677 at 1689.600 kb on - strand, within EX28DRAFT_1677 at 1689.659 kb on - strand, within EX28DRAFT_1677 at 1689.659 kb on - strand, within EX28DRAFT_1677 at 1689.662 kb on + strand, within EX28DRAFT_1677 at 1689.662 kb on + strand, within EX28DRAFT_1677 at 1689.743 kb on + strand, within EX28DRAFT_1677 at 1689.743 kb on + strand, within EX28DRAFT_1677 at 1689.744 kb on - strand, within EX28DRAFT_1677 at 1689.830 kb on + strand, within EX28DRAFT_1677 at 1690.070 kb on - strand at 1690.116 kb on - strand at 1690.123 kb on + strand at 1690.123 kb on + strand at 1690.124 kb on - strand at 1690.154 kb on + strand at 1690.259 kb on - strand, within EX28DRAFT_1678 at 1690.399 kb on - strand, within EX28DRAFT_1678 at 1690.432 kb on + strand, within EX28DRAFT_1678 at 1690.718 kb on - strand, within EX28DRAFT_1678 at 1690.718 kb on - strand, within EX28DRAFT_1678
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,688,142 + EX28DRAFT_1676 0.80 -0.3 1,688,238 + EX28DRAFT_1676 0.89 -0.8 1,688,328 + -0.2 1,688,329 - +0.2 1,688,350 + +0.3 1,688,351 - -3.3 1,688,406 + -0.7 1,688,497 - +0.1 1,688,532 + -1.6 1,688,615 + -0.8 1,688,641 + +0.5 1,688,651 - -0.4 1,688,651 - +0.2 1,688,653 - -0.2 1,688,712 - -0.4 1,688,712 - -0.4 1,688,712 - +0.3 1,688,756 + -0.4 1,688,869 + +0.6 1,688,869 + -0.1 1,688,872 + -1.9 1,688,873 - -0.1 1,689,437 - EX28DRAFT_1677 0.50 -1.3 1,689,452 - EX28DRAFT_1677 0.51 -0.2 1,689,599 + EX28DRAFT_1677 0.62 +0.1 1,689,600 - EX28DRAFT_1677 0.62 -0.4 1,689,600 - EX28DRAFT_1677 0.62 -0.1 1,689,600 - EX28DRAFT_1677 0.62 -0.1 1,689,659 - EX28DRAFT_1677 0.67 -0.5 1,689,659 - EX28DRAFT_1677 0.67 +0.0 1,689,662 + EX28DRAFT_1677 0.67 -0.3 1,689,662 + EX28DRAFT_1677 0.67 -0.4 1,689,743 + EX28DRAFT_1677 0.73 -0.5 1,689,743 + EX28DRAFT_1677 0.73 -0.6 1,689,744 - EX28DRAFT_1677 0.73 +0.2 1,689,830 + EX28DRAFT_1677 0.79 -1.0 1,690,070 - -0.1 1,690,116 - +0.4 1,690,123 + -2.1 1,690,123 + +0.8 1,690,124 - -0.8 1,690,154 + +0.0 1,690,259 - EX28DRAFT_1678 0.11 -0.0 1,690,399 - EX28DRAFT_1678 0.24 +0.2 1,690,432 + EX28DRAFT_1678 0.26 -0.6 1,690,718 - EX28DRAFT_1678 0.51 -0.3 1,690,718 - EX28DRAFT_1678 0.51 +0.7
Or see this region's nucleotide sequence