Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1677

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1676 and EX28DRAFT_1677 are separated by 400 nucleotidesEX28DRAFT_1677 and EX28DRAFT_1678 are separated by 11 nucleotides EX28DRAFT_1676: EX28DRAFT_1676 - ABC-type metal ion transport system, ATPase component, at 1,687,324 to 1,688,346 _1676 EX28DRAFT_1677: EX28DRAFT_1677 - Cysteine synthase, at 1,688,747 to 1,690,117 _1677 EX28DRAFT_1678: EX28DRAFT_1678 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,690,129 to 1,691,274 _1678 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -3 -2 -1 0 1at 1688.142 kb on + strand, within EX28DRAFT_1676at 1688.238 kb on + strand, within EX28DRAFT_1676at 1688.328 kb on + strandat 1688.329 kb on - strandat 1688.350 kb on + strandat 1688.351 kb on - strandat 1688.406 kb on + strandat 1688.497 kb on - strandat 1688.532 kb on + strandat 1688.615 kb on + strandat 1688.641 kb on + strandat 1688.651 kb on - strandat 1688.651 kb on - strandat 1688.653 kb on - strandat 1688.712 kb on - strandat 1688.712 kb on - strandat 1688.712 kb on - strandat 1688.756 kb on + strandat 1688.869 kb on + strandat 1688.869 kb on + strandat 1688.872 kb on + strandat 1688.873 kb on - strandat 1689.437 kb on - strand, within EX28DRAFT_1677at 1689.452 kb on - strand, within EX28DRAFT_1677at 1689.599 kb on + strand, within EX28DRAFT_1677at 1689.600 kb on - strand, within EX28DRAFT_1677at 1689.600 kb on - strand, within EX28DRAFT_1677at 1689.600 kb on - strand, within EX28DRAFT_1677at 1689.659 kb on - strand, within EX28DRAFT_1677at 1689.659 kb on - strand, within EX28DRAFT_1677at 1689.662 kb on + strand, within EX28DRAFT_1677at 1689.662 kb on + strand, within EX28DRAFT_1677at 1689.743 kb on + strand, within EX28DRAFT_1677at 1689.743 kb on + strand, within EX28DRAFT_1677at 1689.744 kb on - strand, within EX28DRAFT_1677at 1689.830 kb on + strand, within EX28DRAFT_1677at 1690.070 kb on - strandat 1690.116 kb on - strandat 1690.123 kb on + strandat 1690.123 kb on + strandat 1690.124 kb on - strandat 1690.154 kb on + strandat 1690.259 kb on - strand, within EX28DRAFT_1678at 1690.399 kb on - strand, within EX28DRAFT_1678at 1690.432 kb on + strand, within EX28DRAFT_1678at 1690.718 kb on - strand, within EX28DRAFT_1678at 1690.718 kb on - strand, within EX28DRAFT_1678

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,688,142 + EX28DRAFT_1676 0.80 -0.3
1,688,238 + EX28DRAFT_1676 0.89 -0.8
1,688,328 + -0.2
1,688,329 - +0.2
1,688,350 + +0.3
1,688,351 - -3.3
1,688,406 + -0.7
1,688,497 - +0.1
1,688,532 + -1.6
1,688,615 + -0.8
1,688,641 + +0.5
1,688,651 - -0.4
1,688,651 - +0.2
1,688,653 - -0.2
1,688,712 - -0.4
1,688,712 - -0.4
1,688,712 - +0.3
1,688,756 + -0.4
1,688,869 + +0.6
1,688,869 + -0.1
1,688,872 + -1.9
1,688,873 - -0.1
1,689,437 - EX28DRAFT_1677 0.50 -1.3
1,689,452 - EX28DRAFT_1677 0.51 -0.2
1,689,599 + EX28DRAFT_1677 0.62 +0.1
1,689,600 - EX28DRAFT_1677 0.62 -0.4
1,689,600 - EX28DRAFT_1677 0.62 -0.1
1,689,600 - EX28DRAFT_1677 0.62 -0.1
1,689,659 - EX28DRAFT_1677 0.67 -0.5
1,689,659 - EX28DRAFT_1677 0.67 +0.0
1,689,662 + EX28DRAFT_1677 0.67 -0.3
1,689,662 + EX28DRAFT_1677 0.67 -0.4
1,689,743 + EX28DRAFT_1677 0.73 -0.5
1,689,743 + EX28DRAFT_1677 0.73 -0.6
1,689,744 - EX28DRAFT_1677 0.73 +0.2
1,689,830 + EX28DRAFT_1677 0.79 -1.0
1,690,070 - -0.1
1,690,116 - +0.4
1,690,123 + -2.1
1,690,123 + +0.8
1,690,124 - -0.8
1,690,154 + +0.0
1,690,259 - EX28DRAFT_1678 0.11 -0.0
1,690,399 - EX28DRAFT_1678 0.24 +0.2
1,690,432 + EX28DRAFT_1678 0.26 -0.6
1,690,718 - EX28DRAFT_1678 0.51 -0.3
1,690,718 - EX28DRAFT_1678 0.51 +0.7

Or see this region's nucleotide sequence