Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1622 and EX28DRAFT_1623 are separated by 76 nucleotides EX28DRAFT_1623 and EX28DRAFT_1624 overlap by 1 nucleotides EX28DRAFT_1624 and EX28DRAFT_1625 overlap by 8 nucleotides
EX28DRAFT_1622: EX28DRAFT_1622 - Protein of unknown function (DUF2569), at 1,640,240 to 1,640,680
_1622
EX28DRAFT_1623: EX28DRAFT_1623 - electron transport complex, RnfABCDGE type, A subunit, at 1,640,757 to 1,641,338
_1623
EX28DRAFT_1624: EX28DRAFT_1624 - electron transport complex, RnfABCDGE type, B subunit, at 1,641,338 to 1,641,916
_1624
EX28DRAFT_1625: EX28DRAFT_1625 - electron transport complex, RnfABCDGE type, C subunit, at 1,641,909 to 1,644,044
_1625
Position (kb)
1641
1642 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1640.340 kb on - strand, within EX28DRAFT_1622 at 1640.401 kb on + strand, within EX28DRAFT_1622 at 1640.450 kb on + strand, within EX28DRAFT_1622 at 1640.480 kb on - strand, within EX28DRAFT_1622 at 1640.500 kb on + strand, within EX28DRAFT_1622 at 1640.507 kb on + strand, within EX28DRAFT_1622 at 1640.508 kb on - strand, within EX28DRAFT_1622 at 1640.508 kb on - strand, within EX28DRAFT_1622 at 1640.508 kb on - strand, within EX28DRAFT_1622 at 1640.513 kb on - strand, within EX28DRAFT_1622 at 1640.679 kb on - strand at 1640.694 kb on - strand at 1640.709 kb on - strand at 1640.728 kb on + strand at 1640.729 kb on - strand at 1640.755 kb on + strand at 1640.756 kb on - strand at 1640.770 kb on + strand at 1640.771 kb on - strand at 1640.771 kb on - strand at 1640.967 kb on + strand, within EX28DRAFT_1623 at 1640.988 kb on - strand, within EX28DRAFT_1623 at 1641.018 kb on - strand, within EX28DRAFT_1623 at 1641.197 kb on + strand, within EX28DRAFT_1623 at 1641.198 kb on - strand, within EX28DRAFT_1623 at 1641.318 kb on - strand at 1641.820 kb on + strand, within EX28DRAFT_1624 at 1641.820 kb on + strand, within EX28DRAFT_1624 at 1641.914 kb on + strand at 1641.914 kb on + strand at 1641.914 kb on + strand at 1641.914 kb on + strand at 1641.915 kb on - strand at 1641.915 kb on - strand at 1641.915 kb on - strand at 1641.915 kb on - strand at 1642.442 kb on + strand, within EX28DRAFT_1625 at 1642.556 kb on + strand, within EX28DRAFT_1625 at 1642.556 kb on + strand, within EX28DRAFT_1625 at 1642.579 kb on + strand, within EX28DRAFT_1625
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,640,340 - EX28DRAFT_1622 0.23 -0.2 1,640,401 + EX28DRAFT_1622 0.37 -0.7 1,640,450 + EX28DRAFT_1622 0.48 -0.6 1,640,480 - EX28DRAFT_1622 0.54 +0.2 1,640,500 + EX28DRAFT_1622 0.59 -3.9 1,640,507 + EX28DRAFT_1622 0.61 +0.6 1,640,508 - EX28DRAFT_1622 0.61 -0.4 1,640,508 - EX28DRAFT_1622 0.61 -0.6 1,640,508 - EX28DRAFT_1622 0.61 +0.7 1,640,513 - EX28DRAFT_1622 0.62 -0.7 1,640,679 - +0.1 1,640,694 - -1.0 1,640,709 - -3.0 1,640,728 + +0.4 1,640,729 - -2.3 1,640,755 + +0.1 1,640,756 - -3.5 1,640,770 + -1.4 1,640,771 - -1.0 1,640,771 - -1.6 1,640,967 + EX28DRAFT_1623 0.36 -1.2 1,640,988 - EX28DRAFT_1623 0.40 -0.9 1,641,018 - EX28DRAFT_1623 0.45 -1.7 1,641,197 + EX28DRAFT_1623 0.76 -1.5 1,641,198 - EX28DRAFT_1623 0.76 -0.8 1,641,318 - -2.0 1,641,820 + EX28DRAFT_1624 0.83 -2.0 1,641,820 + EX28DRAFT_1624 0.83 -1.8 1,641,914 + -2.9 1,641,914 + -0.7 1,641,914 + -3.0 1,641,914 + -0.8 1,641,915 - -2.2 1,641,915 - -3.9 1,641,915 - +0.8 1,641,915 - -2.6 1,642,442 + EX28DRAFT_1625 0.25 -3.2 1,642,556 + EX28DRAFT_1625 0.30 -0.6 1,642,556 + EX28DRAFT_1625 0.30 -4.6 1,642,579 + EX28DRAFT_1625 0.31 -1.6
Or see this region's nucleotide sequence