Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1618 and EX28DRAFT_1619 are separated by 52 nucleotides EX28DRAFT_1619 and EX28DRAFT_1620 are separated by 231 nucleotides EX28DRAFT_1620 and EX28DRAFT_1621 are separated by 231 nucleotides EX28DRAFT_1621 and EX28DRAFT_1622 are separated by 86 nucleotides
EX28DRAFT_1618: EX28DRAFT_1618 - adenosine deaminase, at 1,637,243 to 1,638,244
_1618
EX28DRAFT_1619: EX28DRAFT_1619 - Predicted dehydrogenases and related proteins, at 1,638,297 to 1,639,337
_1619
EX28DRAFT_1620: EX28DRAFT_1620 - hypothetical protein, at 1,639,569 to 1,639,706
_1620
EX28DRAFT_1621: EX28DRAFT_1621 - Haemolysin expression modulating protein, at 1,639,938 to 1,640,153
_1621
EX28DRAFT_1622: EX28DRAFT_1622 - Protein of unknown function (DUF2569), at 1,640,240 to 1,640,680
_1622
Position (kb)
1638
1639
1640 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1637.340 kb on + strand at 1637.383 kb on - strand, within EX28DRAFT_1618 at 1637.522 kb on + strand, within EX28DRAFT_1618 at 1637.522 kb on + strand, within EX28DRAFT_1618 at 1637.623 kb on + strand, within EX28DRAFT_1618 at 1637.624 kb on - strand, within EX28DRAFT_1618 at 1637.659 kb on + strand, within EX28DRAFT_1618 at 1637.660 kb on - strand, within EX28DRAFT_1618 at 1637.669 kb on - strand, within EX28DRAFT_1618 at 1637.986 kb on + strand, within EX28DRAFT_1618 at 1637.987 kb on - strand, within EX28DRAFT_1618 at 1638.272 kb on - strand at 1638.433 kb on + strand, within EX28DRAFT_1619 at 1638.434 kb on - strand, within EX28DRAFT_1619 at 1638.434 kb on - strand, within EX28DRAFT_1619 at 1638.434 kb on - strand, within EX28DRAFT_1619 at 1638.518 kb on + strand, within EX28DRAFT_1619 at 1638.524 kb on - strand, within EX28DRAFT_1619 at 1638.621 kb on - strand, within EX28DRAFT_1619 at 1638.706 kb on + strand, within EX28DRAFT_1619 at 1638.706 kb on + strand, within EX28DRAFT_1619 at 1639.047 kb on - strand, within EX28DRAFT_1619 at 1639.365 kb on - strand at 1639.403 kb on - strand at 1639.413 kb on - strand at 1639.419 kb on + strand at 1639.434 kb on + strand at 1639.450 kb on + strand at 1639.451 kb on - strand at 1639.544 kb on + strand at 1639.545 kb on - strand at 1639.561 kb on + strand at 1639.562 kb on - strand at 1639.562 kb on - strand at 1639.666 kb on - strand, within EX28DRAFT_1620 at 1639.700 kb on + strand at 1639.720 kb on + strand at 1639.732 kb on + strand at 1639.732 kb on + strand at 1639.733 kb on - strand at 1639.733 kb on - strand at 1639.733 kb on - strand at 1639.733 kb on - strand at 1639.735 kb on + strand at 1639.735 kb on + strand at 1639.736 kb on - strand at 1639.736 kb on - strand at 1639.736 kb on - strand at 1639.748 kb on + strand at 1639.749 kb on - strand at 1639.749 kb on - strand at 1639.907 kb on - strand at 1639.907 kb on - strand at 1639.907 kb on - strand at 1639.909 kb on + strand at 1639.920 kb on - strand at 1639.934 kb on + strand at 1639.937 kb on + strand at 1639.938 kb on - strand at 1639.938 kb on - strand at 1640.019 kb on + strand, within EX28DRAFT_1621 at 1640.020 kb on - strand, within EX28DRAFT_1621 at 1640.020 kb on - strand, within EX28DRAFT_1621 at 1640.048 kb on + strand, within EX28DRAFT_1621 at 1640.049 kb on - strand, within EX28DRAFT_1621 at 1640.051 kb on + strand, within EX28DRAFT_1621 at 1640.051 kb on + strand, within EX28DRAFT_1621 at 1640.051 kb on + strand, within EX28DRAFT_1621 at 1640.055 kb on + strand, within EX28DRAFT_1621 at 1640.127 kb on - strand, within EX28DRAFT_1621 at 1640.150 kb on - strand at 1640.151 kb on + strand at 1640.181 kb on + strand at 1640.181 kb on + strand at 1640.181 kb on + strand at 1640.181 kb on + strand at 1640.181 kb on + strand at 1640.182 kb on - strand at 1640.182 kb on - strand at 1640.183 kb on + strand at 1640.183 kb on + strand at 1640.183 kb on + strand at 1640.184 kb on - strand at 1640.184 kb on - strand at 1640.228 kb on - strand at 1640.311 kb on - strand, within EX28DRAFT_1622
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,637,340 + -0.1 1,637,383 - EX28DRAFT_1618 0.14 +0.4 1,637,522 + EX28DRAFT_1618 0.28 -1.9 1,637,522 + EX28DRAFT_1618 0.28 -0.1 1,637,623 + EX28DRAFT_1618 0.38 +0.5 1,637,624 - EX28DRAFT_1618 0.38 +0.3 1,637,659 + EX28DRAFT_1618 0.42 -0.3 1,637,660 - EX28DRAFT_1618 0.42 +0.3 1,637,669 - EX28DRAFT_1618 0.43 -1.1 1,637,986 + EX28DRAFT_1618 0.74 +0.6 1,637,987 - EX28DRAFT_1618 0.74 +0.6 1,638,272 - -0.1 1,638,433 + EX28DRAFT_1619 0.13 -0.2 1,638,434 - EX28DRAFT_1619 0.13 +0.0 1,638,434 - EX28DRAFT_1619 0.13 +0.5 1,638,434 - EX28DRAFT_1619 0.13 +0.8 1,638,518 + EX28DRAFT_1619 0.21 -2.0 1,638,524 - EX28DRAFT_1619 0.22 +0.5 1,638,621 - EX28DRAFT_1619 0.31 +0.8 1,638,706 + EX28DRAFT_1619 0.39 +0.0 1,638,706 + EX28DRAFT_1619 0.39 +0.2 1,639,047 - EX28DRAFT_1619 0.72 +2.2 1,639,365 - -2.5 1,639,403 - +0.2 1,639,413 - +0.5 1,639,419 + -0.1 1,639,434 + -0.1 1,639,450 + +0.9 1,639,451 - -0.5 1,639,544 + +0.1 1,639,545 - -0.2 1,639,561 + -0.0 1,639,562 - +1.1 1,639,562 - -0.3 1,639,666 - EX28DRAFT_1620 0.70 -1.0 1,639,700 + +0.2 1,639,720 + +0.0 1,639,732 + -0.6 1,639,732 + -0.2 1,639,733 - -0.1 1,639,733 - +0.2 1,639,733 - -0.6 1,639,733 - -0.3 1,639,735 + +1.4 1,639,735 + +0.8 1,639,736 - -0.4 1,639,736 - +0.2 1,639,736 - +1.5 1,639,748 + +0.7 1,639,749 - +1.1 1,639,749 - +0.2 1,639,907 - +0.7 1,639,907 - -0.5 1,639,907 - +1.4 1,639,909 + +1.6 1,639,920 - -1.5 1,639,934 + -0.3 1,639,937 + -0.2 1,639,938 - +0.6 1,639,938 - -0.5 1,640,019 + EX28DRAFT_1621 0.38 +0.0 1,640,020 - EX28DRAFT_1621 0.38 -0.2 1,640,020 - EX28DRAFT_1621 0.38 -3.0 1,640,048 + EX28DRAFT_1621 0.51 +1.1 1,640,049 - EX28DRAFT_1621 0.51 -0.2 1,640,051 + EX28DRAFT_1621 0.52 -0.3 1,640,051 + EX28DRAFT_1621 0.52 -0.3 1,640,051 + EX28DRAFT_1621 0.52 -0.3 1,640,055 + EX28DRAFT_1621 0.54 +0.4 1,640,127 - EX28DRAFT_1621 0.88 -0.6 1,640,150 - -0.8 1,640,151 + +0.5 1,640,181 + -0.4 1,640,181 + -2.3 1,640,181 + +0.5 1,640,181 + -0.5 1,640,181 + +0.1 1,640,182 - +0.5 1,640,182 - -0.2 1,640,183 + -1.2 1,640,183 + -0.5 1,640,183 + -1.8 1,640,184 - +0.1 1,640,184 - -0.6 1,640,228 - +0.3 1,640,311 - EX28DRAFT_1622 0.16 +0.2
Or see this region's nucleotide sequence