Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1616 and EX28DRAFT_1617 are separated by 48 nucleotides EX28DRAFT_1617 and EX28DRAFT_1618 are separated by 96 nucleotides
EX28DRAFT_1616: EX28DRAFT_1616 - PTS system, maltose and glucose-specific subfamily, IIC component, at 1,634,333 to 1,635,925
_1616
EX28DRAFT_1617: EX28DRAFT_1617 - putative C-S lyase, at 1,635,974 to 1,637,146
_1617
EX28DRAFT_1618: EX28DRAFT_1618 - adenosine deaminase, at 1,637,243 to 1,638,244
_1618
Position (kb)
1635
1636
1637
1638 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1635.055 kb on + strand, within EX28DRAFT_1616 at 1635.056 kb on - strand, within EX28DRAFT_1616 at 1635.212 kb on - strand, within EX28DRAFT_1616 at 1635.261 kb on - strand, within EX28DRAFT_1616 at 1635.341 kb on - strand, within EX28DRAFT_1616 at 1635.524 kb on + strand, within EX28DRAFT_1616 at 1635.563 kb on + strand, within EX28DRAFT_1616 at 1635.680 kb on + strand, within EX28DRAFT_1616 at 1635.825 kb on + strand at 1635.828 kb on + strand at 1635.829 kb on - strand at 1635.829 kb on - strand at 1635.834 kb on + strand at 1635.835 kb on - strand at 1635.916 kb on - strand at 1635.916 kb on - strand at 1635.955 kb on + strand at 1635.955 kb on + strand at 1635.988 kb on + strand at 1636.018 kb on + strand at 1636.031 kb on + strand at 1636.247 kb on + strand, within EX28DRAFT_1617 at 1636.265 kb on + strand, within EX28DRAFT_1617 at 1636.265 kb on + strand, within EX28DRAFT_1617 at 1636.266 kb on - strand, within EX28DRAFT_1617 at 1636.354 kb on + strand, within EX28DRAFT_1617 at 1636.355 kb on - strand, within EX28DRAFT_1617 at 1636.681 kb on + strand, within EX28DRAFT_1617 at 1636.682 kb on - strand, within EX28DRAFT_1617 at 1636.682 kb on - strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.875 kb on - strand, within EX28DRAFT_1617 at 1636.875 kb on - strand, within EX28DRAFT_1617 at 1636.876 kb on + strand, within EX28DRAFT_1617 at 1636.877 kb on - strand, within EX28DRAFT_1617 at 1636.877 kb on - strand, within EX28DRAFT_1617 at 1637.035 kb on + strand at 1637.035 kb on + strand at 1637.036 kb on - strand at 1637.134 kb on + strand at 1637.134 kb on + strand at 1637.135 kb on - strand at 1637.135 kb on - strand at 1637.144 kb on + strand at 1637.207 kb on + strand at 1637.208 kb on - strand at 1637.208 kb on - strand at 1637.251 kb on + strand at 1637.252 kb on - strand at 1637.252 kb on - strand at 1637.252 kb on - strand at 1637.265 kb on + strand at 1637.340 kb on + strand at 1637.383 kb on - strand, within EX28DRAFT_1618 at 1637.522 kb on + strand, within EX28DRAFT_1618 at 1637.522 kb on + strand, within EX28DRAFT_1618 at 1637.623 kb on + strand, within EX28DRAFT_1618 at 1637.624 kb on - strand, within EX28DRAFT_1618 at 1637.659 kb on + strand, within EX28DRAFT_1618 at 1637.660 kb on - strand, within EX28DRAFT_1618 at 1637.669 kb on - strand, within EX28DRAFT_1618 at 1637.986 kb on + strand, within EX28DRAFT_1618 at 1637.987 kb on - strand, within EX28DRAFT_1618
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,635,055 + EX28DRAFT_1616 0.45 +1.4 1,635,056 - EX28DRAFT_1616 0.45 +0.1 1,635,212 - EX28DRAFT_1616 0.55 -0.2 1,635,261 - EX28DRAFT_1616 0.58 +0.8 1,635,341 - EX28DRAFT_1616 0.63 -1.2 1,635,524 + EX28DRAFT_1616 0.75 -0.1 1,635,563 + EX28DRAFT_1616 0.77 -0.2 1,635,680 + EX28DRAFT_1616 0.85 -0.6 1,635,825 + +0.9 1,635,828 + -2.1 1,635,829 - +0.0 1,635,829 - +0.3 1,635,834 + +0.5 1,635,835 - -0.0 1,635,916 - -1.1 1,635,916 - -0.4 1,635,955 + +1.3 1,635,955 + +0.4 1,635,988 + +0.3 1,636,018 + +0.2 1,636,031 + +1.5 1,636,247 + EX28DRAFT_1617 0.23 +0.3 1,636,265 + EX28DRAFT_1617 0.25 -0.8 1,636,265 + EX28DRAFT_1617 0.25 -0.7 1,636,266 - EX28DRAFT_1617 0.25 +0.7 1,636,354 + EX28DRAFT_1617 0.32 -0.1 1,636,355 - EX28DRAFT_1617 0.32 +1.0 1,636,681 + EX28DRAFT_1617 0.60 -0.2 1,636,682 - EX28DRAFT_1617 0.60 -0.3 1,636,682 - EX28DRAFT_1617 0.60 -0.1 1,636,874 + EX28DRAFT_1617 0.77 -0.3 1,636,874 + EX28DRAFT_1617 0.77 -0.3 1,636,874 + EX28DRAFT_1617 0.77 -0.8 1,636,874 + EX28DRAFT_1617 0.77 -0.7 1,636,875 - EX28DRAFT_1617 0.77 -0.8 1,636,875 - EX28DRAFT_1617 0.77 +0.0 1,636,876 + EX28DRAFT_1617 0.77 +0.6 1,636,877 - EX28DRAFT_1617 0.77 +0.2 1,636,877 - EX28DRAFT_1617 0.77 +0.1 1,637,035 + -1.0 1,637,035 + +0.8 1,637,036 - -0.7 1,637,134 + -1.9 1,637,134 + +2.8 1,637,135 - +0.3 1,637,135 - -0.4 1,637,144 + -0.0 1,637,207 + +0.8 1,637,208 - +0.2 1,637,208 - +0.5 1,637,251 + -0.1 1,637,252 - +0.3 1,637,252 - -0.5 1,637,252 - +0.2 1,637,265 + -0.5 1,637,340 + -0.1 1,637,383 - EX28DRAFT_1618 0.14 +0.4 1,637,522 + EX28DRAFT_1618 0.28 -1.9 1,637,522 + EX28DRAFT_1618 0.28 -0.1 1,637,623 + EX28DRAFT_1618 0.38 +0.5 1,637,624 - EX28DRAFT_1618 0.38 +0.3 1,637,659 + EX28DRAFT_1618 0.42 -0.3 1,637,660 - EX28DRAFT_1618 0.42 +0.3 1,637,669 - EX28DRAFT_1618 0.43 -1.1 1,637,986 + EX28DRAFT_1618 0.74 +0.6 1,637,987 - EX28DRAFT_1618 0.74 +0.6
Or see this region's nucleotide sequence