Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1542 and EX28DRAFT_1543 are separated by 120 nucleotides EX28DRAFT_1543 and EX28DRAFT_1544 are separated by 25 nucleotides
EX28DRAFT_1542: EX28DRAFT_1542 - Universal stress protein UspA and related nucleotide-binding proteins, at 1,556,557 to 1,557,507
_1542
EX28DRAFT_1543: EX28DRAFT_1543 - NAD/NADP transhydrogenase beta subunit, at 1,557,628 to 1,559,001
_1543
EX28DRAFT_1544: EX28DRAFT_1544 - NAD(P) transhydrogenase, alpha subunit, at 1,559,027 to 1,560,556
_1544
Position (kb)
1557
1558
1559
1560 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1556.633 kb on - strand at 1556.633 kb on - strand at 1556.692 kb on + strand, within EX28DRAFT_1542 at 1556.788 kb on + strand, within EX28DRAFT_1542 at 1556.788 kb on + strand, within EX28DRAFT_1542 at 1556.791 kb on + strand, within EX28DRAFT_1542 at 1556.792 kb on - strand, within EX28DRAFT_1542 at 1556.818 kb on - strand, within EX28DRAFT_1542 at 1556.820 kb on + strand, within EX28DRAFT_1542 at 1556.820 kb on + strand, within EX28DRAFT_1542 at 1556.964 kb on + strand, within EX28DRAFT_1542 at 1557.124 kb on - strand, within EX28DRAFT_1542 at 1557.585 kb on - strand at 1558.236 kb on + strand, within EX28DRAFT_1543 at 1558.247 kb on + strand, within EX28DRAFT_1543 at 1558.247 kb on + strand, within EX28DRAFT_1543 at 1558.247 kb on + strand, within EX28DRAFT_1543 at 1558.248 kb on - strand, within EX28DRAFT_1543 at 1558.248 kb on - strand, within EX28DRAFT_1543 at 1558.248 kb on - strand, within EX28DRAFT_1543 at 1558.314 kb on + strand, within EX28DRAFT_1543 at 1558.347 kb on - strand, within EX28DRAFT_1543 at 1558.499 kb on - strand, within EX28DRAFT_1543 at 1558.633 kb on - strand, within EX28DRAFT_1543 at 1558.694 kb on + strand, within EX28DRAFT_1543 at 1558.700 kb on + strand, within EX28DRAFT_1543 at 1558.701 kb on - strand, within EX28DRAFT_1543 at 1558.701 kb on - strand, within EX28DRAFT_1543 at 1558.915 kb on - strand at 1558.915 kb on - strand at 1558.915 kb on - strand at 1558.915 kb on - strand at 1558.966 kb on - strand at 1558.988 kb on + strand at 1558.988 kb on + strand at 1558.988 kb on + strand at 1559.016 kb on + strand at 1559.016 kb on + strand at 1559.016 kb on + strand at 1559.016 kb on + strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.188 kb on + strand, within EX28DRAFT_1544 at 1559.209 kb on + strand, within EX28DRAFT_1544 at 1559.241 kb on + strand, within EX28DRAFT_1544 at 1559.242 kb on - strand, within EX28DRAFT_1544 at 1559.242 kb on - strand, within EX28DRAFT_1544 at 1559.244 kb on + strand, within EX28DRAFT_1544 at 1559.330 kb on - strand, within EX28DRAFT_1544 at 1559.440 kb on + strand, within EX28DRAFT_1544 at 1559.534 kb on - strand, within EX28DRAFT_1544 at 1559.855 kb on - strand, within EX28DRAFT_1544 at 1559.957 kb on + strand, within EX28DRAFT_1544
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,556,633 - -1.3 1,556,633 - +0.8 1,556,692 + EX28DRAFT_1542 0.14 -1.1 1,556,788 + EX28DRAFT_1542 0.24 -0.2 1,556,788 + EX28DRAFT_1542 0.24 -0.0 1,556,791 + EX28DRAFT_1542 0.25 -1.3 1,556,792 - EX28DRAFT_1542 0.25 -1.5 1,556,818 - EX28DRAFT_1542 0.27 -0.2 1,556,820 + EX28DRAFT_1542 0.28 -0.4 1,556,820 + EX28DRAFT_1542 0.28 -0.3 1,556,964 + EX28DRAFT_1542 0.43 -0.5 1,557,124 - EX28DRAFT_1542 0.60 -0.4 1,557,585 - -0.2 1,558,236 + EX28DRAFT_1543 0.44 -0.3 1,558,247 + EX28DRAFT_1543 0.45 -0.8 1,558,247 + EX28DRAFT_1543 0.45 -0.8 1,558,247 + EX28DRAFT_1543 0.45 -1.0 1,558,248 - EX28DRAFT_1543 0.45 -0.0 1,558,248 - EX28DRAFT_1543 0.45 -2.6 1,558,248 - EX28DRAFT_1543 0.45 +0.5 1,558,314 + EX28DRAFT_1543 0.50 +0.1 1,558,347 - EX28DRAFT_1543 0.52 -0.3 1,558,499 - EX28DRAFT_1543 0.63 -0.6 1,558,633 - EX28DRAFT_1543 0.73 -2.6 1,558,694 + EX28DRAFT_1543 0.78 -1.2 1,558,700 + EX28DRAFT_1543 0.78 -0.3 1,558,701 - EX28DRAFT_1543 0.78 -0.2 1,558,701 - EX28DRAFT_1543 0.78 +0.5 1,558,915 - -0.2 1,558,915 - +1.2 1,558,915 - -0.6 1,558,915 - -0.1 1,558,966 - -0.0 1,558,988 + +0.4 1,558,988 + -0.2 1,558,988 + +0.8 1,559,016 + -0.2 1,559,016 + +0.1 1,559,016 + +0.6 1,559,016 + -0.6 1,559,017 - +0.3 1,559,017 - -0.0 1,559,017 - +2.7 1,559,017 - -0.3 1,559,017 - +0.1 1,559,017 - -0.2 1,559,017 - -0.2 1,559,188 + EX28DRAFT_1544 0.11 +1.2 1,559,209 + EX28DRAFT_1544 0.12 +0.1 1,559,241 + EX28DRAFT_1544 0.14 -0.6 1,559,242 - EX28DRAFT_1544 0.14 +0.7 1,559,242 - EX28DRAFT_1544 0.14 +1.3 1,559,244 + EX28DRAFT_1544 0.14 -0.6 1,559,330 - EX28DRAFT_1544 0.20 -0.7 1,559,440 + EX28DRAFT_1544 0.27 +0.5 1,559,534 - EX28DRAFT_1544 0.33 -0.2 1,559,855 - EX28DRAFT_1544 0.54 -0.9 1,559,957 + EX28DRAFT_1544 0.61 +0.3
Or see this region's nucleotide sequence