Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1518 and EX28DRAFT_1519 are separated by 78 nucleotides EX28DRAFT_1519 and EX28DRAFT_1520 overlap by 4 nucleotides
EX28DRAFT_1518: EX28DRAFT_1518 - Signal transduction histidine kinase, at 1,531,163 to 1,532,359
_1518
EX28DRAFT_1519: EX28DRAFT_1519 - RND family efflux transporter, MFP subunit, at 1,532,438 to 1,533,586
_1519
EX28DRAFT_1520: EX28DRAFT_1520 - Cation/multidrug efflux pump, at 1,533,583 to 1,536,660
_1520
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-1
0
1
2 at 1531.630 kb on + strand, within EX28DRAFT_1518 at 1531.631 kb on - strand, within EX28DRAFT_1518 at 1531.631 kb on - strand, within EX28DRAFT_1518 at 1531.750 kb on - strand, within EX28DRAFT_1518 at 1532.090 kb on + strand, within EX28DRAFT_1518 at 1532.317 kb on - strand at 1532.317 kb on - strand at 1532.406 kb on + strand at 1532.425 kb on - strand at 1532.437 kb on + strand at 1532.482 kb on + strand at 1532.482 kb on + strand at 1532.483 kb on - strand at 1532.483 kb on - strand at 1532.486 kb on + strand at 1532.486 kb on + strand at 1532.487 kb on - strand at 1532.487 kb on - strand at 1532.615 kb on + strand, within EX28DRAFT_1519 at 1532.616 kb on - strand, within EX28DRAFT_1519 at 1533.421 kb on + strand, within EX28DRAFT_1519 at 1533.467 kb on + strand, within EX28DRAFT_1519 at 1533.468 kb on - strand, within EX28DRAFT_1519 at 1533.468 kb on - strand, within EX28DRAFT_1519 at 1533.468 kb on - strand, within EX28DRAFT_1519 at 1533.468 kb on - strand, within EX28DRAFT_1519 at 1533.470 kb on - strand, within EX28DRAFT_1519 at 1533.610 kb on - strand at 1533.691 kb on + strand at 1533.692 kb on - strand at 1533.726 kb on + strand at 1533.727 kb on - strand at 1533.842 kb on - strand at 1534.042 kb on - strand, within EX28DRAFT_1520 at 1534.361 kb on - strand, within EX28DRAFT_1520
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,531,630 + EX28DRAFT_1518 0.39 -1.5 1,531,631 - EX28DRAFT_1518 0.39 -1.5 1,531,631 - EX28DRAFT_1518 0.39 -0.3 1,531,750 - EX28DRAFT_1518 0.49 +0.4 1,532,090 + EX28DRAFT_1518 0.77 -0.3 1,532,317 - +0.7 1,532,317 - +0.1 1,532,406 + +0.3 1,532,425 - +0.0 1,532,437 + +0.7 1,532,482 + -0.0 1,532,482 + +0.4 1,532,483 - +1.8 1,532,483 - +0.2 1,532,486 + +0.1 1,532,486 + -0.2 1,532,487 - -0.1 1,532,487 - +0.2 1,532,615 + EX28DRAFT_1519 0.15 +1.4 1,532,616 - EX28DRAFT_1519 0.15 +0.1 1,533,421 + EX28DRAFT_1519 0.86 +0.3 1,533,467 + EX28DRAFT_1519 0.90 +0.6 1,533,468 - EX28DRAFT_1519 0.90 +0.1 1,533,468 - EX28DRAFT_1519 0.90 -0.0 1,533,468 - EX28DRAFT_1519 0.90 +0.0 1,533,468 - EX28DRAFT_1519 0.90 +0.1 1,533,470 - EX28DRAFT_1519 0.90 +0.1 1,533,610 - +0.7 1,533,691 + +0.6 1,533,692 - -0.2 1,533,726 + +1.2 1,533,727 - -0.2 1,533,842 - +0.3 1,534,042 - EX28DRAFT_1520 0.15 +0.2 1,534,361 - EX28DRAFT_1520 0.25 +1.2
Or see this region's nucleotide sequence