Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1507 and EX28DRAFT_1508 are separated by 38 nucleotides EX28DRAFT_1508 and EX28DRAFT_1509 overlap by 14 nucleotides EX28DRAFT_1509 and EX28DRAFT_1510 are separated by 118 nucleotides EX28DRAFT_1510 and EX28DRAFT_1511 are separated by 133 nucleotides
EX28DRAFT_1507: EX28DRAFT_1507 - V8-like Glu-specific endopeptidase, at 1,523,017 to 1,523,838
_1507
EX28DRAFT_1508: EX28DRAFT_1508 - Membrane transporters of cations and cationic drugs, at 1,523,877 to 1,524,206
_1508
EX28DRAFT_1509: EX28DRAFT_1509 - Membrane transporters of cations and cationic drugs, at 1,524,193 to 1,524,555
_1509
EX28DRAFT_1510: EX28DRAFT_1510 - hypothetical protein, at 1,524,674 to 1,524,844
_1510
EX28DRAFT_1511: EX28DRAFT_1511 - Predicted permease, at 1,524,978 to 1,526,012
_1511
Position (kb) 1524
1525 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1523.889 kb on + strand at 1523.889 kb on + strand at 1523.890 kb on - strand at 1523.944 kb on - strand, within EX28DRAFT_1508 at 1524.025 kb on - strand, within EX28DRAFT_1508 at 1524.539 kb on - strand at 1524.539 kb on - strand at 1524.676 kb on - strand at 1524.677 kb on + strand at 1524.678 kb on - strand at 1524.730 kb on - strand, within EX28DRAFT_1510 at 1524.732 kb on - strand, within EX28DRAFT_1510 at 1524.753 kb on + strand, within EX28DRAFT_1510 at 1524.767 kb on - strand, within EX28DRAFT_1510 at 1525.046 kb on - strand at 1525.077 kb on - strand at 1525.088 kb on + strand, within EX28DRAFT_1511 at 1525.119 kb on - strand, within EX28DRAFT_1511 at 1525.266 kb on + strand, within EX28DRAFT_1511 at 1525.266 kb on + strand, within EX28DRAFT_1511 at 1525.356 kb on + strand, within EX28DRAFT_1511 at 1525.357 kb on - strand, within EX28DRAFT_1511 at 1525.359 kb on - strand, within EX28DRAFT_1511 at 1525.680 kb on + strand, within EX28DRAFT_1511 at 1525.680 kb on + strand, within EX28DRAFT_1511 at 1525.680 kb on + strand, within EX28DRAFT_1511 at 1525.680 kb on + strand, within EX28DRAFT_1511 at 1525.680 kb on + strand, within EX28DRAFT_1511 at 1525.681 kb on - strand, within EX28DRAFT_1511 at 1525.681 kb on - strand, within EX28DRAFT_1511 at 1525.681 kb on - strand, within EX28DRAFT_1511 at 1525.682 kb on + strand, within EX28DRAFT_1511 at 1525.753 kb on - strand, within EX28DRAFT_1511
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,523,889 + +0.9 1,523,889 + -0.5 1,523,890 - +0.6 1,523,944 - EX28DRAFT_1508 0.20 -0.0 1,524,025 - EX28DRAFT_1508 0.45 -1.3 1,524,539 - -0.4 1,524,539 - -0.9 1,524,676 - -0.9 1,524,677 + +0.5 1,524,678 - -4.3 1,524,730 - EX28DRAFT_1510 0.33 -0.3 1,524,732 - EX28DRAFT_1510 0.34 -2.6 1,524,753 + EX28DRAFT_1510 0.46 -0.1 1,524,767 - EX28DRAFT_1510 0.54 -1.0 1,525,046 - -0.8 1,525,077 - +1.0 1,525,088 + EX28DRAFT_1511 0.11 +0.9 1,525,119 - EX28DRAFT_1511 0.14 +0.1 1,525,266 + EX28DRAFT_1511 0.28 -1.3 1,525,266 + EX28DRAFT_1511 0.28 -0.8 1,525,356 + EX28DRAFT_1511 0.37 +0.1 1,525,357 - EX28DRAFT_1511 0.37 +0.1 1,525,359 - EX28DRAFT_1511 0.37 +0.3 1,525,680 + EX28DRAFT_1511 0.68 -0.2 1,525,680 + EX28DRAFT_1511 0.68 -0.1 1,525,680 + EX28DRAFT_1511 0.68 -0.4 1,525,680 + EX28DRAFT_1511 0.68 -2.7 1,525,680 + EX28DRAFT_1511 0.68 +0.2 1,525,681 - EX28DRAFT_1511 0.68 -0.5 1,525,681 - EX28DRAFT_1511 0.68 +0.5 1,525,681 - EX28DRAFT_1511 0.68 +0.5 1,525,682 + EX28DRAFT_1511 0.68 +0.4 1,525,753 - EX28DRAFT_1511 0.75 -0.1
Or see this region's nucleotide sequence