Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1498 and EX28DRAFT_1499 are separated by 214 nucleotides EX28DRAFT_1499 and EX28DRAFT_1500 are separated by 25 nucleotides EX28DRAFT_1500 and EX28DRAFT_1501 are separated by 157 nucleotides
EX28DRAFT_1498: EX28DRAFT_1498 - Glutamine synthetase, at 1,512,559 to 1,513,977
_1498
EX28DRAFT_1499: EX28DRAFT_1499 - Predicted glutamine amidotransferases, at 1,514,192 to 1,514,956
_1499
EX28DRAFT_1500: EX28DRAFT_1500 - Predicted transcriptional regulators, at 1,514,982 to 1,515,539
_1500
EX28DRAFT_1501: EX28DRAFT_1501 - NAD-dependent aldehyde dehydrogenases, at 1,515,697 to 1,517,190
_1501
Position (kb)
1514
1515 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1513.192 kb on - strand, within EX28DRAFT_1498 at 1513.192 kb on - strand, within EX28DRAFT_1498 at 1513.192 kb on - strand, within EX28DRAFT_1498 at 1513.631 kb on + strand, within EX28DRAFT_1498 at 1513.772 kb on + strand, within EX28DRAFT_1498 at 1513.772 kb on + strand, within EX28DRAFT_1498 at 1513.773 kb on - strand, within EX28DRAFT_1498 at 1513.885 kb on + strand at 1513.889 kb on + strand at 1513.890 kb on - strand at 1513.982 kb on + strand at 1513.982 kb on + strand at 1513.983 kb on - strand at 1514.126 kb on - strand at 1514.218 kb on + strand at 1514.248 kb on + strand at 1514.314 kb on - strand, within EX28DRAFT_1499 at 1514.317 kb on + strand, within EX28DRAFT_1499 at 1514.318 kb on - strand, within EX28DRAFT_1499 at 1514.352 kb on + strand, within EX28DRAFT_1499 at 1514.353 kb on - strand, within EX28DRAFT_1499 at 1514.388 kb on - strand, within EX28DRAFT_1499 at 1514.426 kb on + strand, within EX28DRAFT_1499 at 1514.643 kb on + strand, within EX28DRAFT_1499 at 1514.643 kb on + strand, within EX28DRAFT_1499 at 1514.700 kb on + strand, within EX28DRAFT_1499 at 1514.760 kb on + strand, within EX28DRAFT_1499 at 1514.962 kb on - strand at 1515.131 kb on + strand, within EX28DRAFT_1500 at 1515.219 kb on - strand, within EX28DRAFT_1500 at 1515.403 kb on + strand, within EX28DRAFT_1500 at 1515.447 kb on + strand, within EX28DRAFT_1500 at 1515.510 kb on - strand at 1515.538 kb on - strand at 1515.538 kb on - strand at 1515.538 kb on - strand at 1515.542 kb on - strand at 1515.584 kb on - strand at 1515.584 kb on - strand at 1515.642 kb on - strand at 1515.665 kb on + strand at 1515.665 kb on + strand at 1515.665 kb on + strand at 1515.666 kb on - strand at 1515.666 kb on - strand at 1515.670 kb on - strand at 1515.705 kb on + strand at 1515.706 kb on - strand at 1515.706 kb on - strand at 1515.761 kb on + strand at 1515.765 kb on + strand at 1515.778 kb on + strand at 1515.902 kb on + strand, within EX28DRAFT_1501 at 1515.956 kb on + strand, within EX28DRAFT_1501 at 1515.956 kb on + strand, within EX28DRAFT_1501
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,513,192 - EX28DRAFT_1498 0.45 +0.5 1,513,192 - EX28DRAFT_1498 0.45 -0.2 1,513,192 - EX28DRAFT_1498 0.45 +0.1 1,513,631 + EX28DRAFT_1498 0.76 +1.2 1,513,772 + EX28DRAFT_1498 0.85 -2.6 1,513,772 + EX28DRAFT_1498 0.85 -0.4 1,513,773 - EX28DRAFT_1498 0.86 +0.9 1,513,885 + -0.3 1,513,889 + -1.4 1,513,890 - -0.0 1,513,982 + +0.1 1,513,982 + +0.1 1,513,983 - +0.6 1,514,126 - -0.5 1,514,218 + +0.6 1,514,248 + +0.8 1,514,314 - EX28DRAFT_1499 0.16 +0.4 1,514,317 + EX28DRAFT_1499 0.16 -2.1 1,514,318 - EX28DRAFT_1499 0.16 -1.1 1,514,352 + EX28DRAFT_1499 0.21 -0.9 1,514,353 - EX28DRAFT_1499 0.21 -0.0 1,514,388 - EX28DRAFT_1499 0.26 -0.2 1,514,426 + EX28DRAFT_1499 0.31 -0.2 1,514,643 + EX28DRAFT_1499 0.59 +0.6 1,514,643 + EX28DRAFT_1499 0.59 +0.5 1,514,700 + EX28DRAFT_1499 0.66 +1.9 1,514,760 + EX28DRAFT_1499 0.74 +0.9 1,514,962 - -0.5 1,515,131 + EX28DRAFT_1500 0.27 -1.5 1,515,219 - EX28DRAFT_1500 0.42 -2.1 1,515,403 + EX28DRAFT_1500 0.75 +1.4 1,515,447 + EX28DRAFT_1500 0.83 +0.6 1,515,510 - -2.1 1,515,538 - +0.3 1,515,538 - -0.4 1,515,538 - -0.8 1,515,542 - +0.0 1,515,584 - -0.0 1,515,584 - -1.6 1,515,642 - +0.5 1,515,665 + +2.8 1,515,665 + +0.3 1,515,665 + +1.2 1,515,666 - -0.1 1,515,666 - +0.3 1,515,670 - +2.6 1,515,705 + +0.0 1,515,706 - +0.3 1,515,706 - -1.0 1,515,761 + +0.4 1,515,765 + -0.8 1,515,778 + -0.3 1,515,902 + EX28DRAFT_1501 0.14 +0.1 1,515,956 + EX28DRAFT_1501 0.17 +0.1 1,515,956 + EX28DRAFT_1501 0.17 +1.1
Or see this region's nucleotide sequence