Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1477

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1476 and EX28DRAFT_1477 are separated by 77 nucleotidesEX28DRAFT_1477 and EX28DRAFT_1478 are separated by 701 nucleotides EX28DRAFT_1476: EX28DRAFT_1476 - Predicted amidohydrolase, at 1,491,311 to 1,492,291 _1476 EX28DRAFT_1477: EX28DRAFT_1477 - Uncharacterized protein conserved in bacteria, at 1,492,369 to 1,492,686 _1477 EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933 _1478 Position (kb) 1492 1493Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1491.595 kb on + strand, within EX28DRAFT_1476at 1491.596 kb on - strand, within EX28DRAFT_1476at 1491.624 kb on - strand, within EX28DRAFT_1476at 1491.632 kb on + strand, within EX28DRAFT_1476at 1491.632 kb on + strand, within EX28DRAFT_1476at 1491.632 kb on + strand, within EX28DRAFT_1476at 1491.632 kb on + strand, within EX28DRAFT_1476at 1491.633 kb on - strand, within EX28DRAFT_1476at 1491.643 kb on + strand, within EX28DRAFT_1476at 1491.643 kb on + strand, within EX28DRAFT_1476at 1491.716 kb on - strand, within EX28DRAFT_1476at 1492.012 kb on - strand, within EX28DRAFT_1476at 1492.089 kb on - strand, within EX28DRAFT_1476at 1492.166 kb on - strand, within EX28DRAFT_1476at 1492.209 kb on + strandat 1492.209 kb on + strandat 1492.210 kb on - strandat 1492.210 kb on - strandat 1492.210 kb on - strandat 1492.219 kb on - strandat 1492.319 kb on + strandat 1492.399 kb on - strandat 1492.578 kb on + strand, within EX28DRAFT_1477at 1492.854 kb on + strandat 1492.862 kb on - strandat 1492.876 kb on - strandat 1492.879 kb on + strandat 1492.891 kb on + strandat 1492.892 kb on - strandat 1492.919 kb on + strandat 1492.923 kb on + strandat 1492.965 kb on - strandat 1492.990 kb on - strandat 1492.990 kb on - strandat 1492.990 kb on - strandat 1492.990 kb on - strandat 1492.993 kb on - strandat 1493.002 kb on + strandat 1493.003 kb on - strandat 1493.159 kb on - strandat 1493.679 kb on - strand, within EX28DRAFT_1478

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,491,595 + EX28DRAFT_1476 0.29 -3.7
1,491,596 - EX28DRAFT_1476 0.29 -1.2
1,491,624 - EX28DRAFT_1476 0.32 +1.1
1,491,632 + EX28DRAFT_1476 0.33 +0.2
1,491,632 + EX28DRAFT_1476 0.33 +0.1
1,491,632 + EX28DRAFT_1476 0.33 -0.4
1,491,632 + EX28DRAFT_1476 0.33 -2.2
1,491,633 - EX28DRAFT_1476 0.33 -0.6
1,491,643 + EX28DRAFT_1476 0.34 +0.2
1,491,643 + EX28DRAFT_1476 0.34 -0.2
1,491,716 - EX28DRAFT_1476 0.41 -2.2
1,492,012 - EX28DRAFT_1476 0.71 +0.1
1,492,089 - EX28DRAFT_1476 0.79 +1.8
1,492,166 - EX28DRAFT_1476 0.87 -0.2
1,492,209 + -0.0
1,492,209 + +0.3
1,492,210 - +0.9
1,492,210 - +0.5
1,492,210 - +1.3
1,492,219 - +1.7
1,492,319 + -0.5
1,492,399 - +0.4
1,492,578 + EX28DRAFT_1477 0.66 -1.5
1,492,854 + -0.2
1,492,862 - +0.9
1,492,876 - -0.3
1,492,879 + +1.0
1,492,891 + -1.2
1,492,892 - +1.0
1,492,919 + -0.8
1,492,923 + -1.1
1,492,965 - +1.2
1,492,990 - -0.0
1,492,990 - +0.8
1,492,990 - -0.1
1,492,990 - +0.5
1,492,993 - -0.5
1,493,002 + +1.1
1,493,003 - +0.7
1,493,159 - +0.3
1,493,679 - EX28DRAFT_1478 0.53 +0.2

Or see this region's nucleotide sequence