Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1381

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1378 and EX28DRAFT_1379 are separated by 18 nucleotidesEX28DRAFT_1379 and EX28DRAFT_1380 are separated by 68 nucleotidesEX28DRAFT_1380 and EX28DRAFT_1381 are separated by 54 nucleotidesEX28DRAFT_1381 and EX28DRAFT_1382 are separated by 51 nucleotidesEX28DRAFT_1382 and EX28DRAFT_1383 are separated by 103 nucleotides EX28DRAFT_1378: EX28DRAFT_1378 - Acetyltransferases, at 1,392,233 to 1,392,745 _1378 EX28DRAFT_1379: EX28DRAFT_1379 - Lactoylglutathione lyase and related lyases, at 1,392,764 to 1,393,168 _1379 EX28DRAFT_1380: EX28DRAFT_1380 - transcriptional regulator, HxlR family, at 1,393,237 to 1,393,611 _1380 EX28DRAFT_1381: EX28DRAFT_1381 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,393,666 to 1,394,445 _1381 EX28DRAFT_1382: EX28DRAFT_1382 - transcriptional regulator, TetR family, at 1,394,497 to 1,395,075 _1382 EX28DRAFT_1383: EX28DRAFT_1383 - Uncharacterized protein conserved in bacteria, at 1,395,179 to 1,395,646 _1383 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -2 -1 0 1at 1392.699 kb on - strandat 1392.752 kb on + strandat 1392.787 kb on - strandat 1392.833 kb on - strand, within EX28DRAFT_1379at 1392.877 kb on + strand, within EX28DRAFT_1379at 1393.060 kb on + strand, within EX28DRAFT_1379at 1393.068 kb on - strand, within EX28DRAFT_1379at 1393.087 kb on + strand, within EX28DRAFT_1379at 1393.087 kb on + strand, within EX28DRAFT_1379at 1393.087 kb on + strand, within EX28DRAFT_1379at 1393.088 kb on - strand, within EX28DRAFT_1379at 1393.095 kb on + strand, within EX28DRAFT_1379at 1393.098 kb on + strand, within EX28DRAFT_1379at 1393.099 kb on - strand, within EX28DRAFT_1379at 1393.099 kb on - strand, within EX28DRAFT_1379at 1393.116 kb on + strand, within EX28DRAFT_1379at 1393.183 kb on - strandat 1393.187 kb on - strandat 1393.187 kb on - strandat 1393.187 kb on - strandat 1393.300 kb on + strand, within EX28DRAFT_1380at 1393.300 kb on + strand, within EX28DRAFT_1380at 1393.356 kb on - strand, within EX28DRAFT_1380at 1393.356 kb on - strand, within EX28DRAFT_1380at 1393.491 kb on + strand, within EX28DRAFT_1380at 1393.491 kb on + strand, within EX28DRAFT_1380at 1393.495 kb on + strand, within EX28DRAFT_1380at 1393.561 kb on - strand, within EX28DRAFT_1380at 1393.563 kb on - strand, within EX28DRAFT_1380at 1393.632 kb on - strandat 1393.802 kb on + strand, within EX28DRAFT_1381at 1393.989 kb on - strand, within EX28DRAFT_1381at 1394.007 kb on - strand, within EX28DRAFT_1381at 1394.013 kb on - strand, within EX28DRAFT_1381at 1394.061 kb on + strand, within EX28DRAFT_1381at 1394.147 kb on - strand, within EX28DRAFT_1381at 1394.147 kb on - strand, within EX28DRAFT_1381at 1394.152 kb on - strand, within EX28DRAFT_1381at 1394.275 kb on + strand, within EX28DRAFT_1381at 1394.276 kb on - strand, within EX28DRAFT_1381at 1394.578 kb on - strand, within EX28DRAFT_1382at 1394.837 kb on - strand, within EX28DRAFT_1382at 1395.027 kb on + strandat 1395.049 kb on - strandat 1395.123 kb on + strandat 1395.158 kb on + strandat 1395.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,392,699 - -0.2
1,392,752 + -0.7
1,392,787 - +0.2
1,392,833 - EX28DRAFT_1379 0.17 -0.3
1,392,877 + EX28DRAFT_1379 0.28 -0.1
1,393,060 + EX28DRAFT_1379 0.73 -0.2
1,393,068 - EX28DRAFT_1379 0.75 +0.2
1,393,087 + EX28DRAFT_1379 0.80 -1.0
1,393,087 + EX28DRAFT_1379 0.80 -0.1
1,393,087 + EX28DRAFT_1379 0.80 +0.6
1,393,088 - EX28DRAFT_1379 0.80 -0.4
1,393,095 + EX28DRAFT_1379 0.82 -1.4
1,393,098 + EX28DRAFT_1379 0.82 +0.3
1,393,099 - EX28DRAFT_1379 0.83 -1.2
1,393,099 - EX28DRAFT_1379 0.83 -0.1
1,393,116 + EX28DRAFT_1379 0.87 -0.5
1,393,183 - +0.2
1,393,187 - -0.1
1,393,187 - -1.7
1,393,187 - +0.8
1,393,300 + EX28DRAFT_1380 0.17 +0.6
1,393,300 + EX28DRAFT_1380 0.17 -0.1
1,393,356 - EX28DRAFT_1380 0.32 +0.5
1,393,356 - EX28DRAFT_1380 0.32 -0.4
1,393,491 + EX28DRAFT_1380 0.68 +0.1
1,393,491 + EX28DRAFT_1380 0.68 +0.2
1,393,495 + EX28DRAFT_1380 0.69 -0.7
1,393,561 - EX28DRAFT_1380 0.86 +0.1
1,393,563 - EX28DRAFT_1380 0.87 +0.0
1,393,632 - +0.0
1,393,802 + EX28DRAFT_1381 0.17 -0.5
1,393,989 - EX28DRAFT_1381 0.41 +0.3
1,394,007 - EX28DRAFT_1381 0.44 +1.0
1,394,013 - EX28DRAFT_1381 0.44 -0.9
1,394,061 + EX28DRAFT_1381 0.51 -0.4
1,394,147 - EX28DRAFT_1381 0.62 -1.9
1,394,147 - EX28DRAFT_1381 0.62 -1.3
1,394,152 - EX28DRAFT_1381 0.62 +1.4
1,394,275 + EX28DRAFT_1381 0.78 -1.5
1,394,276 - EX28DRAFT_1381 0.78 -0.4
1,394,578 - EX28DRAFT_1382 0.14 -0.9
1,394,837 - EX28DRAFT_1382 0.59 -1.0
1,395,027 + -0.7
1,395,049 - -2.6
1,395,123 + -0.4
1,395,158 + -1.1
1,395,161 - -1.3

Or see this region's nucleotide sequence