Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1343 and EX28DRAFT_1344 overlap by 4 nucleotides EX28DRAFT_1344 and EX28DRAFT_1345 are separated by 176 nucleotides
EX28DRAFT_1343: EX28DRAFT_1343 - type I secretion membrane fusion protein, HlyD family, at 1,337,826 to 1,339,001
_1343
EX28DRAFT_1344: EX28DRAFT_1344 - type I secretion system ATPase, LssB family, at 1,338,998 to 1,341,178
_1344
EX28DRAFT_1345: EX28DRAFT_1345 - Bacterial Ig-like domain (group 3)/Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella/Putative flagellar system-associated repeat, at 1,341,355 to 1,359,360
_1345
Position (kb)
1338
1339
1340
1341
1342 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1338.001 kb on + strand, within EX28DRAFT_1343 at 1338.001 kb on + strand, within EX28DRAFT_1343 at 1338.001 kb on + strand, within EX28DRAFT_1343 at 1338.002 kb on - strand, within EX28DRAFT_1343 at 1338.004 kb on + strand, within EX28DRAFT_1343 at 1338.005 kb on - strand, within EX28DRAFT_1343 at 1338.279 kb on - strand, within EX28DRAFT_1343 at 1338.379 kb on + strand, within EX28DRAFT_1343 at 1338.382 kb on + strand, within EX28DRAFT_1343 at 1339.045 kb on + strand at 1339.072 kb on + strand at 1339.228 kb on + strand, within EX28DRAFT_1344 at 1339.228 kb on + strand, within EX28DRAFT_1344 at 1339.372 kb on - strand, within EX28DRAFT_1344 at 1339.372 kb on - strand, within EX28DRAFT_1344 at 1339.372 kb on - strand, within EX28DRAFT_1344 at 1339.372 kb on - strand, within EX28DRAFT_1344 at 1339.372 kb on - strand, within EX28DRAFT_1344 at 1339.737 kb on + strand, within EX28DRAFT_1344 at 1339.738 kb on - strand, within EX28DRAFT_1344 at 1339.762 kb on - strand, within EX28DRAFT_1344 at 1339.995 kb on - strand, within EX28DRAFT_1344 at 1340.096 kb on - strand, within EX28DRAFT_1344 at 1340.099 kb on - strand, within EX28DRAFT_1344 at 1340.317 kb on + strand, within EX28DRAFT_1344 at 1340.452 kb on + strand, within EX28DRAFT_1344 at 1340.525 kb on - strand, within EX28DRAFT_1344 at 1340.525 kb on - strand, within EX28DRAFT_1344 at 1340.525 kb on - strand, within EX28DRAFT_1344 at 1340.632 kb on - strand, within EX28DRAFT_1344 at 1340.695 kb on + strand, within EX28DRAFT_1344 at 1340.695 kb on + strand, within EX28DRAFT_1344 at 1340.696 kb on - strand, within EX28DRAFT_1344 at 1340.754 kb on + strand, within EX28DRAFT_1344 at 1340.755 kb on - strand, within EX28DRAFT_1344 at 1340.755 kb on - strand, within EX28DRAFT_1344 at 1340.767 kb on - strand, within EX28DRAFT_1344 at 1340.767 kb on - strand, within EX28DRAFT_1344 at 1341.004 kb on + strand at 1341.134 kb on - strand at 1341.134 kb on - strand at 1341.159 kb on + strand at 1341.178 kb on + strand at 1341.179 kb on - strand at 1341.179 kb on - strand at 1341.184 kb on + strand at 1341.184 kb on + strand at 1341.185 kb on - strand at 1341.274 kb on + strand at 1341.288 kb on - strand at 1341.309 kb on + strand at 1341.364 kb on + strand at 1341.561 kb on - strand at 1341.719 kb on + strand at 1341.720 kb on - strand at 1341.720 kb on - strand at 1341.975 kb on - strand at 1342.010 kb on + strand at 1342.010 kb on + strand at 1342.011 kb on - strand at 1342.014 kb on + strand at 1342.014 kb on + strand at 1342.016 kb on + strand at 1342.016 kb on + strand at 1342.016 kb on + strand at 1342.016 kb on + strand at 1342.017 kb on - strand at 1342.017 kb on - strand at 1342.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,338,001 + EX28DRAFT_1343 0.15 -0.6 1,338,001 + EX28DRAFT_1343 0.15 -0.5 1,338,001 + EX28DRAFT_1343 0.15 +0.4 1,338,002 - EX28DRAFT_1343 0.15 +0.8 1,338,004 + EX28DRAFT_1343 0.15 -0.8 1,338,005 - EX28DRAFT_1343 0.15 +0.6 1,338,279 - EX28DRAFT_1343 0.39 -0.4 1,338,379 + EX28DRAFT_1343 0.47 +0.2 1,338,382 + EX28DRAFT_1343 0.47 -0.6 1,339,045 + +0.1 1,339,072 + +0.2 1,339,228 + EX28DRAFT_1344 0.11 +1.3 1,339,228 + EX28DRAFT_1344 0.11 +0.6 1,339,372 - EX28DRAFT_1344 0.17 +0.1 1,339,372 - EX28DRAFT_1344 0.17 -0.1 1,339,372 - EX28DRAFT_1344 0.17 -0.1 1,339,372 - EX28DRAFT_1344 0.17 +0.3 1,339,372 - EX28DRAFT_1344 0.17 +2.3 1,339,737 + EX28DRAFT_1344 0.34 -0.2 1,339,738 - EX28DRAFT_1344 0.34 +0.3 1,339,762 - EX28DRAFT_1344 0.35 +0.1 1,339,995 - EX28DRAFT_1344 0.46 -0.4 1,340,096 - EX28DRAFT_1344 0.50 -0.4 1,340,099 - EX28DRAFT_1344 0.50 -0.8 1,340,317 + EX28DRAFT_1344 0.60 +0.1 1,340,452 + EX28DRAFT_1344 0.67 -1.1 1,340,525 - EX28DRAFT_1344 0.70 -0.1 1,340,525 - EX28DRAFT_1344 0.70 -0.2 1,340,525 - EX28DRAFT_1344 0.70 +0.0 1,340,632 - EX28DRAFT_1344 0.75 -2.0 1,340,695 + EX28DRAFT_1344 0.78 -1.8 1,340,695 + EX28DRAFT_1344 0.78 -0.1 1,340,696 - EX28DRAFT_1344 0.78 +0.9 1,340,754 + EX28DRAFT_1344 0.81 +0.9 1,340,755 - EX28DRAFT_1344 0.81 +0.9 1,340,755 - EX28DRAFT_1344 0.81 +1.2 1,340,767 - EX28DRAFT_1344 0.81 -0.7 1,340,767 - EX28DRAFT_1344 0.81 -0.0 1,341,004 + -0.7 1,341,134 - +0.9 1,341,134 - -0.7 1,341,159 + -3.6 1,341,178 + +0.1 1,341,179 - +0.9 1,341,179 - +0.4 1,341,184 + +0.3 1,341,184 + -0.1 1,341,185 - -0.2 1,341,274 + -0.9 1,341,288 - -1.5 1,341,309 + -0.9 1,341,364 + +0.7 1,341,561 - -2.2 1,341,719 + +1.1 1,341,720 - +0.1 1,341,720 - +0.6 1,341,975 - -0.1 1,342,010 + +1.6 1,342,010 + -0.0 1,342,011 - +0.2 1,342,014 + -0.3 1,342,014 + -0.1 1,342,016 + +0.3 1,342,016 + -0.3 1,342,016 + -0.0 1,342,016 + +0.5 1,342,017 - +0.2 1,342,017 - +1.6 1,342,109 + -0.7
Or see this region's nucleotide sequence