Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1306

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1305 and EX28DRAFT_1306 are separated by 88 nucleotidesEX28DRAFT_1306 and EX28DRAFT_1307 are separated by 271 nucleotidesEX28DRAFT_1307 and EX28DRAFT_1308 overlap by 4 nucleotidesEX28DRAFT_1308 and EX28DRAFT_1309 overlap by 4 nucleotides EX28DRAFT_1305: EX28DRAFT_1305 - hypothetical protein, at 1,311,955 to 1,312,755 _1305 EX28DRAFT_1306: EX28DRAFT_1306 - hypothetical protein, at 1,312,844 to 1,313,353 _1306 EX28DRAFT_1307: EX28DRAFT_1307 - hypothetical protein, at 1,313,625 to 1,313,978 _1307 EX28DRAFT_1308: EX28DRAFT_1308 - hypothetical protein, at 1,313,975 to 1,314,172 _1308 EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744 _1309 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -2 -1 0 1at 1311.846 kb on - strandat 1312.029 kb on - strandat 1312.071 kb on + strand, within EX28DRAFT_1305at 1312.115 kb on + strand, within EX28DRAFT_1305at 1312.143 kb on + strand, within EX28DRAFT_1305at 1312.365 kb on - strand, within EX28DRAFT_1305at 1312.381 kb on - strand, within EX28DRAFT_1305at 1312.433 kb on - strand, within EX28DRAFT_1305at 1312.590 kb on + strand, within EX28DRAFT_1305at 1312.680 kb on - strandat 1312.731 kb on + strandat 1312.823 kb on - strandat 1312.831 kb on - strandat 1312.831 kb on - strandat 1312.850 kb on - strandat 1312.889 kb on + strandat 1312.889 kb on + strandat 1312.890 kb on - strandat 1312.894 kb on + strandat 1312.907 kb on - strand, within EX28DRAFT_1306at 1312.935 kb on + strand, within EX28DRAFT_1306at 1312.948 kb on + strand, within EX28DRAFT_1306at 1312.948 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.954 kb on - strand, within EX28DRAFT_1306at 1312.963 kb on + strand, within EX28DRAFT_1306at 1312.963 kb on + strand, within EX28DRAFT_1306at 1312.963 kb on + strand, within EX28DRAFT_1306at 1312.964 kb on - strand, within EX28DRAFT_1306at 1313.089 kb on - strand, within EX28DRAFT_1306at 1313.345 kb on - strandat 1313.410 kb on - strandat 1313.410 kb on - strandat 1313.437 kb on - strandat 1313.437 kb on - strandat 1313.470 kb on - strandat 1313.470 kb on - strandat 1313.492 kb on - strandat 1313.626 kb on + strandat 1313.627 kb on - strandat 1313.845 kb on - strand, within EX28DRAFT_1307at 1313.883 kb on + strand, within EX28DRAFT_1307at 1313.919 kb on + strand, within EX28DRAFT_1307at 1313.952 kb on + strandat 1314.012 kb on - strand, within EX28DRAFT_1308at 1314.113 kb on + strand, within EX28DRAFT_1308at 1314.179 kb on - strandat 1314.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,311,846 - +0.4
1,312,029 - +0.3
1,312,071 + EX28DRAFT_1305 0.14 -0.5
1,312,115 + EX28DRAFT_1305 0.20 +0.2
1,312,143 + EX28DRAFT_1305 0.23 -1.9
1,312,365 - EX28DRAFT_1305 0.51 +0.3
1,312,381 - EX28DRAFT_1305 0.53 -2.5
1,312,433 - EX28DRAFT_1305 0.60 -0.8
1,312,590 + EX28DRAFT_1305 0.79 +0.0
1,312,680 - +0.0
1,312,731 + -0.1
1,312,823 - +1.2
1,312,831 - +0.8
1,312,831 - -0.5
1,312,850 - -0.6
1,312,889 + +0.4
1,312,889 + +0.6
1,312,890 - -0.4
1,312,894 + -0.6
1,312,907 - EX28DRAFT_1306 0.12 +1.1
1,312,935 + EX28DRAFT_1306 0.18 +0.9
1,312,948 + EX28DRAFT_1306 0.20 -0.2
1,312,948 + EX28DRAFT_1306 0.20 -0.3
1,312,953 + EX28DRAFT_1306 0.21 +0.7
1,312,953 + EX28DRAFT_1306 0.21 +0.6
1,312,953 + EX28DRAFT_1306 0.21 +0.4
1,312,953 + EX28DRAFT_1306 0.21 +0.5
1,312,954 - EX28DRAFT_1306 0.22 -0.0
1,312,963 + EX28DRAFT_1306 0.23 +1.0
1,312,963 + EX28DRAFT_1306 0.23 -0.2
1,312,963 + EX28DRAFT_1306 0.23 +1.7
1,312,964 - EX28DRAFT_1306 0.24 +0.9
1,313,089 - EX28DRAFT_1306 0.48 +1.2
1,313,345 - -1.0
1,313,410 - +1.1
1,313,410 - -1.4
1,313,437 - +1.0
1,313,437 - +0.6
1,313,470 - -0.7
1,313,470 - -2.4
1,313,492 - +1.1
1,313,626 + +1.2
1,313,627 - +0.4
1,313,845 - EX28DRAFT_1307 0.62 +0.4
1,313,883 + EX28DRAFT_1307 0.73 -1.3
1,313,919 + EX28DRAFT_1307 0.83 +0.1
1,313,952 + -0.2
1,314,012 - EX28DRAFT_1308 0.19 -0.2
1,314,113 + EX28DRAFT_1308 0.70 -0.9
1,314,179 - +0.1
1,314,179 - +1.0

Or see this region's nucleotide sequence