Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1294 and EX28DRAFT_1295 are separated by 28 nucleotides EX28DRAFT_1295 and EX28DRAFT_1296 overlap by 4 nucleotides EX28DRAFT_1296 and EX28DRAFT_1297 overlap by 14 nucleotides EX28DRAFT_1297 and EX28DRAFT_1298 are separated by 245 nucleotides EX28DRAFT_1298 and EX28DRAFT_1299 are separated by 82 nucleotides
EX28DRAFT_1294: EX28DRAFT_1294 - hypothetical protein, at 1,307,594 to 1,307,740
_1294
EX28DRAFT_1295: EX28DRAFT_1295 - Protein of unknown function (DUF2570), at 1,307,769 to 1,308,155
_1295
EX28DRAFT_1296: EX28DRAFT_1296 - Phage-related lysozyme (muraminidase), at 1,308,152 to 1,308,592
_1296
EX28DRAFT_1297: EX28DRAFT_1297 - hypothetical protein, at 1,308,579 to 1,308,896
_1297
EX28DRAFT_1298: EX28DRAFT_1298 - hypothetical protein, at 1,309,142 to 1,309,351
_1298
EX28DRAFT_1299: EX28DRAFT_1299 - Phage antitermination protein Q, at 1,309,434 to 1,310,123
_1299
Position (kb)
1308
1309 Strain fitness (log2 ratio)
-2
-1
0
1 at 1307.598 kb on + strand at 1307.598 kb on + strand at 1307.599 kb on - strand at 1307.642 kb on - strand, within EX28DRAFT_1294 at 1307.648 kb on - strand, within EX28DRAFT_1294 at 1307.688 kb on + strand, within EX28DRAFT_1294 at 1307.688 kb on + strand, within EX28DRAFT_1294 at 1307.783 kb on + strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.803 kb on - strand at 1307.815 kb on + strand, within EX28DRAFT_1295 at 1307.894 kb on - strand, within EX28DRAFT_1295 at 1308.131 kb on - strand at 1308.258 kb on + strand, within EX28DRAFT_1296 at 1308.259 kb on - strand, within EX28DRAFT_1296 at 1308.320 kb on - strand, within EX28DRAFT_1296 at 1308.321 kb on + strand, within EX28DRAFT_1296 at 1308.321 kb on + strand, within EX28DRAFT_1296 at 1308.321 kb on + strand, within EX28DRAFT_1296 at 1308.322 kb on - strand, within EX28DRAFT_1296 at 1308.322 kb on - strand, within EX28DRAFT_1296 at 1308.515 kb on + strand, within EX28DRAFT_1296 at 1308.515 kb on + strand, within EX28DRAFT_1296 at 1308.515 kb on + strand, within EX28DRAFT_1296 at 1308.622 kb on + strand, within EX28DRAFT_1297 at 1308.623 kb on - strand, within EX28DRAFT_1297 at 1308.644 kb on + strand, within EX28DRAFT_1297 at 1308.679 kb on + strand, within EX28DRAFT_1297 at 1308.729 kb on - strand, within EX28DRAFT_1297 at 1308.801 kb on - strand, within EX28DRAFT_1297 at 1308.805 kb on + strand, within EX28DRAFT_1297 at 1308.875 kb on + strand at 1308.884 kb on + strand at 1308.885 kb on - strand at 1308.896 kb on + strand at 1308.897 kb on - strand at 1308.957 kb on + strand at 1308.957 kb on + strand at 1308.957 kb on + strand at 1308.957 kb on + strand at 1308.957 kb on + strand at 1308.958 kb on - strand at 1308.958 kb on - strand at 1308.958 kb on - strand at 1308.958 kb on - strand at 1308.994 kb on - strand at 1309.094 kb on + strand at 1309.143 kb on + strand at 1309.151 kb on + strand at 1309.151 kb on + strand at 1309.190 kb on - strand, within EX28DRAFT_1298 at 1309.308 kb on - strand, within EX28DRAFT_1298 at 1309.324 kb on + strand, within EX28DRAFT_1298 at 1309.325 kb on - strand, within EX28DRAFT_1298 at 1309.325 kb on - strand, within EX28DRAFT_1298 at 1309.343 kb on + strand at 1309.619 kb on - strand, within EX28DRAFT_1299 at 1309.676 kb on + strand, within EX28DRAFT_1299 at 1309.677 kb on - strand, within EX28DRAFT_1299 at 1309.798 kb on + strand, within EX28DRAFT_1299 at 1309.799 kb on - strand, within EX28DRAFT_1299 at 1309.799 kb on - strand, within EX28DRAFT_1299
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,307,598 + +0.3 1,307,598 + -0.0 1,307,599 - -0.1 1,307,642 - EX28DRAFT_1294 0.33 -0.0 1,307,648 - EX28DRAFT_1294 0.37 +1.0 1,307,688 + EX28DRAFT_1294 0.64 +0.1 1,307,688 + EX28DRAFT_1294 0.64 -0.7 1,307,783 + +0.4 1,307,803 - +0.9 1,307,803 - +0.5 1,307,803 - -0.5 1,307,803 - -2.4 1,307,803 - -0.2 1,307,815 + EX28DRAFT_1295 0.12 +0.9 1,307,894 - EX28DRAFT_1295 0.32 -0.2 1,308,131 - +0.4 1,308,258 + EX28DRAFT_1296 0.24 +0.3 1,308,259 - EX28DRAFT_1296 0.24 +0.8 1,308,320 - EX28DRAFT_1296 0.38 -0.5 1,308,321 + EX28DRAFT_1296 0.38 +1.0 1,308,321 + EX28DRAFT_1296 0.38 -0.2 1,308,321 + EX28DRAFT_1296 0.38 -0.6 1,308,322 - EX28DRAFT_1296 0.39 +1.5 1,308,322 - EX28DRAFT_1296 0.39 -2.1 1,308,515 + EX28DRAFT_1296 0.82 -0.2 1,308,515 + EX28DRAFT_1296 0.82 +1.4 1,308,515 + EX28DRAFT_1296 0.82 -0.2 1,308,622 + EX28DRAFT_1297 0.14 +0.4 1,308,623 - EX28DRAFT_1297 0.14 +1.1 1,308,644 + EX28DRAFT_1297 0.20 +0.8 1,308,679 + EX28DRAFT_1297 0.31 +0.6 1,308,729 - EX28DRAFT_1297 0.47 +0.2 1,308,801 - EX28DRAFT_1297 0.70 +0.1 1,308,805 + EX28DRAFT_1297 0.71 +0.2 1,308,875 + -0.4 1,308,884 + +0.0 1,308,885 - -0.2 1,308,896 + +0.1 1,308,897 - +0.8 1,308,957 + +0.4 1,308,957 + +0.6 1,308,957 + +0.1 1,308,957 + +0.5 1,308,957 + -0.2 1,308,958 - -0.2 1,308,958 - -0.0 1,308,958 - +0.6 1,308,958 - +0.7 1,308,994 - -0.2 1,309,094 + +0.4 1,309,143 + +0.8 1,309,151 + +0.2 1,309,151 + +0.2 1,309,190 - EX28DRAFT_1298 0.23 -1.0 1,309,308 - EX28DRAFT_1298 0.79 +0.3 1,309,324 + EX28DRAFT_1298 0.87 +0.2 1,309,325 - EX28DRAFT_1298 0.87 +0.4 1,309,325 - EX28DRAFT_1298 0.87 +0.5 1,309,343 + -0.3 1,309,619 - EX28DRAFT_1299 0.27 +0.0 1,309,676 + EX28DRAFT_1299 0.35 +0.1 1,309,677 - EX28DRAFT_1299 0.35 -0.1 1,309,798 + EX28DRAFT_1299 0.53 -0.2 1,309,799 - EX28DRAFT_1299 0.53 -0.9 1,309,799 - EX28DRAFT_1299 0.53 -0.1
Or see this region's nucleotide sequence