Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1127 and EX28DRAFT_1128 are separated by 165 nucleotides EX28DRAFT_1128 and EX28DRAFT_1129 are separated by 155 nucleotides EX28DRAFT_1129 and EX28DRAFT_1130 are separated by 5 nucleotides
EX28DRAFT_1127: EX28DRAFT_1127 - hypothetical protein, at 1,143,015 to 1,143,806
_1127
EX28DRAFT_1128: EX28DRAFT_1128 - hypothetical protein, at 1,143,972 to 1,144,211
_1128
EX28DRAFT_1129: EX28DRAFT_1129 - hypothetical protein, at 1,144,367 to 1,144,786
_1129
EX28DRAFT_1130: EX28DRAFT_1130 - RNA polymerase sigma factor, sigma-70 family, at 1,144,792 to 1,145,352
_1130
Position (kb) 1143
1144
1145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1143.191 kb on + strand, within EX28DRAFT_1127 at 1143.214 kb on - strand, within EX28DRAFT_1127 at 1143.288 kb on - strand, within EX28DRAFT_1127 at 1143.368 kb on + strand, within EX28DRAFT_1127 at 1143.394 kb on - strand, within EX28DRAFT_1127 at 1143.421 kb on + strand, within EX28DRAFT_1127 at 1143.422 kb on - strand, within EX28DRAFT_1127 at 1143.932 kb on + strand at 1144.054 kb on + strand, within EX28DRAFT_1128 at 1144.112 kb on - strand, within EX28DRAFT_1128 at 1144.299 kb on + strand at 1144.299 kb on + strand at 1144.299 kb on + strand at 1144.320 kb on + strand at 1144.351 kb on - strand at 1144.360 kb on - strand at 1144.437 kb on + strand, within EX28DRAFT_1129 at 1144.673 kb on - strand, within EX28DRAFT_1129 at 1144.925 kb on - strand, within EX28DRAFT_1130 at 1145.055 kb on - strand, within EX28DRAFT_1130 at 1145.129 kb on - strand, within EX28DRAFT_1130
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,143,191 + EX28DRAFT_1127 0.22 -1.2 1,143,214 - EX28DRAFT_1127 0.25 +2.3 1,143,288 - EX28DRAFT_1127 0.34 -0.1 1,143,368 + EX28DRAFT_1127 0.45 +0.8 1,143,394 - EX28DRAFT_1127 0.48 -1.1 1,143,421 + EX28DRAFT_1127 0.51 -0.6 1,143,422 - EX28DRAFT_1127 0.51 +0.6 1,143,932 + +0.4 1,144,054 + EX28DRAFT_1128 0.34 -2.0 1,144,112 - EX28DRAFT_1128 0.58 -0.7 1,144,299 + +1.0 1,144,299 + +0.8 1,144,299 + +1.1 1,144,320 + -2.3 1,144,351 - +0.0 1,144,360 - -0.9 1,144,437 + EX28DRAFT_1129 0.17 -0.9 1,144,673 - EX28DRAFT_1129 0.73 -0.5 1,144,925 - EX28DRAFT_1130 0.24 -0.1 1,145,055 - EX28DRAFT_1130 0.47 +0.8 1,145,129 - EX28DRAFT_1130 0.60 +0.7
Or see this region's nucleotide sequence