Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1105

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1103 and EX28DRAFT_1104 are separated by 176 nucleotidesEX28DRAFT_1104 and EX28DRAFT_1105 are separated by 95 nucleotidesEX28DRAFT_1105 and EX28DRAFT_1106 are separated by 232 nucleotides EX28DRAFT_1103: EX28DRAFT_1103 - Malic enzyme, at 1,116,823 to 1,118,520 _1103 EX28DRAFT_1104: EX28DRAFT_1104 - 30S ribosomal protein subunit S22 family, at 1,118,697 to 1,118,834 _1104 EX28DRAFT_1105: EX28DRAFT_1105 - Putative biofilm-dependent modulation protein, at 1,118,930 to 1,119,145 _1105 EX28DRAFT_1106: EX28DRAFT_1106 - Zn-dependent hydrolases, including glyoxylases, at 1,119,378 to 1,120,229 _1106 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1117.955 kb on + strand, within EX28DRAFT_1103at 1117.956 kb on - strand, within EX28DRAFT_1103at 1118.050 kb on - strand, within EX28DRAFT_1103at 1118.165 kb on + strand, within EX28DRAFT_1103at 1118.166 kb on - strand, within EX28DRAFT_1103at 1118.211 kb on - strand, within EX28DRAFT_1103at 1118.255 kb on + strand, within EX28DRAFT_1103at 1118.255 kb on + strand, within EX28DRAFT_1103at 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.486 kb on + strandat 1118.487 kb on - strandat 1118.487 kb on - strandat 1118.487 kb on - strandat 1118.489 kb on - strandat 1118.606 kb on + strandat 1118.609 kb on + strandat 1118.610 kb on - strandat 1118.610 kb on - strandat 1118.610 kb on - strandat 1118.628 kb on - strandat 1118.643 kb on + strandat 1118.686 kb on + strandat 1118.699 kb on - strandat 1118.771 kb on + strand, within EX28DRAFT_1104at 1118.796 kb on - strand, within EX28DRAFT_1104at 1118.837 kb on + strandat 1118.838 kb on - strandat 1118.857 kb on + strandat 1118.895 kb on - strandat 1118.895 kb on - strandat 1118.902 kb on + strandat 1118.921 kb on - strandat 1118.962 kb on - strand, within EX28DRAFT_1105at 1118.962 kb on - strand, within EX28DRAFT_1105at 1118.965 kb on + strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.966 kb on - strand, within EX28DRAFT_1105at 1118.979 kb on + strand, within EX28DRAFT_1105at 1118.979 kb on + strand, within EX28DRAFT_1105at 1118.980 kb on - strand, within EX28DRAFT_1105at 1119.121 kb on + strand, within EX28DRAFT_1105at 1119.121 kb on + strand, within EX28DRAFT_1105at 1119.122 kb on - strand, within EX28DRAFT_1105at 1119.122 kb on - strand, within EX28DRAFT_1105at 1119.140 kb on - strandat 1119.171 kb on - strandat 1119.414 kb on + strandat 1119.575 kb on - strand, within EX28DRAFT_1106at 1119.748 kb on + strand, within EX28DRAFT_1106at 1119.748 kb on + strand, within EX28DRAFT_1106at 1119.749 kb on - strand, within EX28DRAFT_1106at 1119.811 kb on - strand, within EX28DRAFT_1106at 1119.896 kb on + strand, within EX28DRAFT_1106at 1119.897 kb on - strand, within EX28DRAFT_1106at 1119.970 kb on + strand, within EX28DRAFT_1106at 1120.005 kb on - strand, within EX28DRAFT_1106

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,117,955 + EX28DRAFT_1103 0.67 +0.4
1,117,956 - EX28DRAFT_1103 0.67 +0.5
1,118,050 - EX28DRAFT_1103 0.72 +0.1
1,118,165 + EX28DRAFT_1103 0.79 +0.1
1,118,166 - EX28DRAFT_1103 0.79 +0.7
1,118,211 - EX28DRAFT_1103 0.82 +0.4
1,118,255 + EX28DRAFT_1103 0.84 -0.1
1,118,255 + EX28DRAFT_1103 0.84 +0.2
1,118,486 + -0.1
1,118,486 + +0.2
1,118,486 + +0.4
1,118,486 + -0.5
1,118,486 + -0.3
1,118,487 - +0.5
1,118,487 - +0.4
1,118,487 - +0.1
1,118,489 - +0.6
1,118,606 + +0.1
1,118,609 + -0.3
1,118,610 - +1.0
1,118,610 - +0.3
1,118,610 - -1.6
1,118,628 - +0.0
1,118,643 + +0.1
1,118,686 + -0.8
1,118,699 - -1.4
1,118,771 + EX28DRAFT_1104 0.54 +2.2
1,118,796 - EX28DRAFT_1104 0.72 -0.4
1,118,837 + +0.2
1,118,838 - -0.6
1,118,857 + +0.8
1,118,895 - +0.1
1,118,895 - -0.6
1,118,902 + -0.1
1,118,921 - -0.1
1,118,962 - EX28DRAFT_1105 0.15 -1.6
1,118,962 - EX28DRAFT_1105 0.15 +0.2
1,118,965 + EX28DRAFT_1105 0.16 -2.9
1,118,966 - EX28DRAFT_1105 0.17 -0.2
1,118,966 - EX28DRAFT_1105 0.17 -0.4
1,118,966 - EX28DRAFT_1105 0.17 +0.5
1,118,966 - EX28DRAFT_1105 0.17 -0.4
1,118,966 - EX28DRAFT_1105 0.17 -0.2
1,118,979 + EX28DRAFT_1105 0.23 +0.1
1,118,979 + EX28DRAFT_1105 0.23 -3.0
1,118,980 - EX28DRAFT_1105 0.23 +0.5
1,119,121 + EX28DRAFT_1105 0.88 +0.2
1,119,121 + EX28DRAFT_1105 0.88 -0.4
1,119,122 - EX28DRAFT_1105 0.89 -0.6
1,119,122 - EX28DRAFT_1105 0.89 +0.2
1,119,140 - +0.1
1,119,171 - -0.0
1,119,414 + -0.0
1,119,575 - EX28DRAFT_1106 0.23 +0.4
1,119,748 + EX28DRAFT_1106 0.43 +0.4
1,119,748 + EX28DRAFT_1106 0.43 +0.6
1,119,749 - EX28DRAFT_1106 0.44 -2.4
1,119,811 - EX28DRAFT_1106 0.51 -1.0
1,119,896 + EX28DRAFT_1106 0.61 -0.0
1,119,897 - EX28DRAFT_1106 0.61 -0.9
1,119,970 + EX28DRAFT_1106 0.69 +1.6
1,120,005 - EX28DRAFT_1106 0.74 +0.1

Or see this region's nucleotide sequence