Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1093 and EX28DRAFT_1094 are separated by 10 nucleotides EX28DRAFT_1094 and EX28DRAFT_1095 overlap by 4 nucleotides EX28DRAFT_1095 and EX28DRAFT_1096 overlap by 1 nucleotides EX28DRAFT_1096 and EX28DRAFT_1097 overlap by 4 nucleotides
EX28DRAFT_1093: EX28DRAFT_1093 - uncharacterized peroxidase-related enzyme, at 1,104,336 to 1,105,427
_1093
EX28DRAFT_1094: EX28DRAFT_1094 - putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family, at 1,105,438 to 1,106,427
_1094
EX28DRAFT_1095: EX28DRAFT_1095 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 1,106,424 to 1,108,031
_1095
EX28DRAFT_1096: EX28DRAFT_1096 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,108,031 to 1,108,879
_1096
EX28DRAFT_1097: EX28DRAFT_1097 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,108,876 to 1,109,820
_1097
Position (kb)
1106
1107
1108
1109 Strain fitness (log2 ratio)
-1
0
1 at 1105.427 kb on + strand at 1105.427 kb on + strand at 1105.427 kb on + strand at 1105.428 kb on - strand at 1105.428 kb on - strand at 1105.428 kb on - strand at 1105.458 kb on + strand at 1105.533 kb on + strand at 1105.534 kb on - strand at 1105.831 kb on + strand, within EX28DRAFT_1094 at 1105.832 kb on - strand, within EX28DRAFT_1094 at 1105.938 kb on + strand, within EX28DRAFT_1094 at 1106.483 kb on + strand at 1106.486 kb on - strand at 1106.604 kb on - strand, within EX28DRAFT_1095 at 1107.006 kb on - strand, within EX28DRAFT_1095 at 1107.107 kb on + strand, within EX28DRAFT_1095 at 1107.687 kb on - strand, within EX28DRAFT_1095 at 1107.828 kb on + strand, within EX28DRAFT_1095 at 1108.134 kb on + strand, within EX28DRAFT_1096 at 1108.134 kb on + strand, within EX28DRAFT_1096 at 1108.134 kb on + strand, within EX28DRAFT_1096 at 1108.135 kb on - strand, within EX28DRAFT_1096 at 1108.135 kb on - strand, within EX28DRAFT_1096 at 1108.191 kb on + strand, within EX28DRAFT_1096 at 1108.341 kb on + strand, within EX28DRAFT_1096 at 1108.636 kb on + strand, within EX28DRAFT_1096 at 1108.644 kb on + strand, within EX28DRAFT_1096 at 1108.644 kb on + strand, within EX28DRAFT_1096 at 1108.645 kb on - strand, within EX28DRAFT_1096 at 1108.734 kb on + strand, within EX28DRAFT_1096 at 1108.863 kb on + strand at 1108.993 kb on + strand, within EX28DRAFT_1097 at 1108.994 kb on - strand, within EX28DRAFT_1097
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,105,427 + +1.7 1,105,427 + +0.1 1,105,427 + +0.3 1,105,428 - -0.2 1,105,428 - +1.3 1,105,428 - -0.3 1,105,458 + +1.4 1,105,533 + +1.1 1,105,534 - +0.5 1,105,831 + EX28DRAFT_1094 0.40 +0.1 1,105,832 - EX28DRAFT_1094 0.40 +0.1 1,105,938 + EX28DRAFT_1094 0.51 +0.2 1,106,483 + -0.7 1,106,486 - +0.9 1,106,604 - EX28DRAFT_1095 0.11 -0.1 1,107,006 - EX28DRAFT_1095 0.36 -0.9 1,107,107 + EX28DRAFT_1095 0.42 -0.1 1,107,687 - EX28DRAFT_1095 0.79 +1.0 1,107,828 + EX28DRAFT_1095 0.87 +1.0 1,108,134 + EX28DRAFT_1096 0.12 -0.6 1,108,134 + EX28DRAFT_1096 0.12 -0.2 1,108,134 + EX28DRAFT_1096 0.12 -1.4 1,108,135 - EX28DRAFT_1096 0.12 -0.3 1,108,135 - EX28DRAFT_1096 0.12 +0.3 1,108,191 + EX28DRAFT_1096 0.19 +0.6 1,108,341 + EX28DRAFT_1096 0.37 -0.3 1,108,636 + EX28DRAFT_1096 0.71 +0.2 1,108,644 + EX28DRAFT_1096 0.72 -0.3 1,108,644 + EX28DRAFT_1096 0.72 -0.2 1,108,645 - EX28DRAFT_1096 0.72 -0.8 1,108,734 + EX28DRAFT_1096 0.83 +0.8 1,108,863 + -0.7 1,108,993 + EX28DRAFT_1097 0.12 +0.5 1,108,994 - EX28DRAFT_1097 0.12 +0.0
Or see this region's nucleotide sequence