Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1035 and EX28DRAFT_1036 are separated by 283 nucleotides EX28DRAFT_1036 and EX28DRAFT_1037 are separated by 95 nucleotides EX28DRAFT_1037 and EX28DRAFT_1038 are separated by 3 nucleotides EX28DRAFT_1038 and EX28DRAFT_1039 overlap by 4 nucleotides
EX28DRAFT_1035: EX28DRAFT_1035 - hypothetical protein, at 1,045,049 to 1,046,389
_1035
EX28DRAFT_1036: EX28DRAFT_1036 - ABC-type dipeptide transport system, periplasmic component, at 1,046,673 to 1,048,271
_1036
EX28DRAFT_1037: EX28DRAFT_1037 - Protein of unknown function (DUF2526), at 1,048,367 to 1,048,600
_1037
EX28DRAFT_1038: EX28DRAFT_1038 - Uncharacterized protein conserved in bacteria, at 1,048,604 to 1,049,053
_1038
EX28DRAFT_1039: EX28DRAFT_1039 - Sortase and related acyltransferases, at 1,049,050 to 1,049,568
_1039
Position (kb)
1046
1047
1048
1049 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.771 kb on - strand, within EX28DRAFT_1035 at 1046.183 kb on + strand, within EX28DRAFT_1035 at 1046.206 kb on - strand, within EX28DRAFT_1035 at 1046.245 kb on + strand, within EX28DRAFT_1035 at 1046.402 kb on + strand at 1046.402 kb on + strand at 1046.403 kb on - strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.404 kb on + strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.405 kb on - strand at 1046.581 kb on - strand at 1046.593 kb on + strand at 1046.633 kb on + strand at 1046.634 kb on - strand at 1046.644 kb on + strand at 1046.644 kb on + strand at 1046.645 kb on - strand at 1046.645 kb on - strand at 1046.646 kb on + strand at 1046.646 kb on + strand at 1046.647 kb on - strand at 1046.648 kb on + strand at 1046.649 kb on - strand at 1046.669 kb on - strand at 1046.678 kb on + strand at 1046.679 kb on - strand at 1046.759 kb on + strand at 1046.760 kb on - strand at 1046.763 kb on + strand at 1046.763 kb on + strand at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.937 kb on + strand, within EX28DRAFT_1036 at 1046.938 kb on - strand, within EX28DRAFT_1036 at 1046.938 kb on - strand, within EX28DRAFT_1036 at 1046.939 kb on + strand, within EX28DRAFT_1036 at 1046.940 kb on - strand, within EX28DRAFT_1036 at 1046.978 kb on + strand, within EX28DRAFT_1036 at 1047.019 kb on + strand, within EX28DRAFT_1036 at 1047.020 kb on + strand, within EX28DRAFT_1036 at 1047.084 kb on + strand, within EX28DRAFT_1036 at 1047.084 kb on + strand, within EX28DRAFT_1036 at 1047.085 kb on - strand, within EX28DRAFT_1036 at 1047.090 kb on + strand, within EX28DRAFT_1036 at 1047.114 kb on - strand, within EX28DRAFT_1036 at 1047.303 kb on + strand, within EX28DRAFT_1036 at 1047.303 kb on + strand, within EX28DRAFT_1036 at 1047.304 kb on - strand, within EX28DRAFT_1036 at 1047.304 kb on - strand, within EX28DRAFT_1036 at 1047.304 kb on - strand, within EX28DRAFT_1036 at 1047.319 kb on - strand, within EX28DRAFT_1036 at 1047.360 kb on + strand, within EX28DRAFT_1036 at 1047.415 kb on + strand, within EX28DRAFT_1036 at 1047.547 kb on - strand, within EX28DRAFT_1036 at 1047.606 kb on - strand, within EX28DRAFT_1036 at 1047.606 kb on - strand, within EX28DRAFT_1036 at 1047.647 kb on + strand, within EX28DRAFT_1036 at 1047.689 kb on + strand, within EX28DRAFT_1036 at 1047.689 kb on + strand, within EX28DRAFT_1036 at 1047.689 kb on + strand, within EX28DRAFT_1036 at 1047.705 kb on - strand, within EX28DRAFT_1036 at 1047.720 kb on + strand, within EX28DRAFT_1036 at 1047.720 kb on + strand, within EX28DRAFT_1036 at 1047.721 kb on - strand, within EX28DRAFT_1036 at 1047.915 kb on + strand, within EX28DRAFT_1036 at 1047.916 kb on - strand, within EX28DRAFT_1036 at 1048.026 kb on - strand, within EX28DRAFT_1036 at 1048.026 kb on - strand, within EX28DRAFT_1036 at 1048.194 kb on + strand at 1048.194 kb on + strand at 1048.194 kb on + strand at 1048.195 kb on - strand at 1048.265 kb on + strand at 1048.265 kb on + strand at 1048.265 kb on + strand at 1048.266 kb on - strand at 1048.269 kb on + strand at 1048.269 kb on + strand at 1048.269 kb on + strand at 1048.270 kb on - strand at 1048.270 kb on - strand at 1048.272 kb on + strand at 1048.272 kb on + strand at 1048.306 kb on - strand at 1048.387 kb on + strand at 1048.490 kb on + strand, within EX28DRAFT_1037 at 1048.534 kb on + strand, within EX28DRAFT_1037 at 1048.910 kb on + strand, within EX28DRAFT_1038 at 1048.911 kb on - strand, within EX28DRAFT_1038 at 1048.911 kb on - strand, within EX28DRAFT_1038 at 1048.985 kb on + strand, within EX28DRAFT_1038 at 1049.009 kb on + strand at 1049.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,045,770 + EX28DRAFT_1035 0.54 +0.9 1,045,770 + EX28DRAFT_1035 0.54 -1.1 1,045,770 + EX28DRAFT_1035 0.54 +0.5 1,045,770 + EX28DRAFT_1035 0.54 -0.4 1,045,770 + EX28DRAFT_1035 0.54 -0.4 1,045,771 - EX28DRAFT_1035 0.54 +0.1 1,046,183 + EX28DRAFT_1035 0.85 +0.2 1,046,206 - EX28DRAFT_1035 0.86 +1.1 1,046,245 + EX28DRAFT_1035 0.89 -0.9 1,046,402 + +0.1 1,046,402 + +0.5 1,046,403 - +0.0 1,046,404 + +0.8 1,046,404 + +0.8 1,046,404 + -5.3 1,046,404 + -0.8 1,046,404 + +0.3 1,046,405 - +0.4 1,046,405 - -0.5 1,046,405 - +0.4 1,046,405 - -0.4 1,046,405 - +0.6 1,046,405 - -0.8 1,046,581 - -0.4 1,046,593 + +0.2 1,046,633 + +0.8 1,046,634 - -0.4 1,046,644 + -0.2 1,046,644 + -0.4 1,046,645 - +0.1 1,046,645 - +0.5 1,046,646 + -0.0 1,046,646 + +0.7 1,046,647 - -3.6 1,046,648 + +0.2 1,046,649 - -1.8 1,046,669 - -0.0 1,046,678 + +0.3 1,046,679 - -0.2 1,046,759 + -0.1 1,046,760 - +0.2 1,046,763 + +0.6 1,046,763 + +0.1 1,046,937 + EX28DRAFT_1036 0.17 -2.3 1,046,937 + EX28DRAFT_1036 0.17 -0.2 1,046,937 + EX28DRAFT_1036 0.17 -0.2 1,046,937 + EX28DRAFT_1036 0.17 -1.3 1,046,938 - EX28DRAFT_1036 0.17 +0.9 1,046,938 - EX28DRAFT_1036 0.17 -0.5 1,046,939 + EX28DRAFT_1036 0.17 -1.5 1,046,940 - EX28DRAFT_1036 0.17 -0.5 1,046,978 + EX28DRAFT_1036 0.19 -1.4 1,047,019 + EX28DRAFT_1036 0.22 +0.6 1,047,020 + EX28DRAFT_1036 0.22 +0.1 1,047,084 + EX28DRAFT_1036 0.26 +0.4 1,047,084 + EX28DRAFT_1036 0.26 -0.1 1,047,085 - EX28DRAFT_1036 0.26 +0.4 1,047,090 + EX28DRAFT_1036 0.26 -0.5 1,047,114 - EX28DRAFT_1036 0.28 +0.3 1,047,303 + EX28DRAFT_1036 0.39 -0.4 1,047,303 + EX28DRAFT_1036 0.39 +0.4 1,047,304 - EX28DRAFT_1036 0.39 -0.1 1,047,304 - EX28DRAFT_1036 0.39 +0.2 1,047,304 - EX28DRAFT_1036 0.39 +0.7 1,047,319 - EX28DRAFT_1036 0.40 +0.9 1,047,360 + EX28DRAFT_1036 0.43 -1.1 1,047,415 + EX28DRAFT_1036 0.46 +0.4 1,047,547 - EX28DRAFT_1036 0.55 -0.2 1,047,606 - EX28DRAFT_1036 0.58 -1.2 1,047,606 - EX28DRAFT_1036 0.58 -0.0 1,047,647 + EX28DRAFT_1036 0.61 +0.3 1,047,689 + EX28DRAFT_1036 0.64 +0.7 1,047,689 + EX28DRAFT_1036 0.64 -0.6 1,047,689 + EX28DRAFT_1036 0.64 -0.3 1,047,705 - EX28DRAFT_1036 0.65 +0.2 1,047,720 + EX28DRAFT_1036 0.65 -0.3 1,047,720 + EX28DRAFT_1036 0.65 -0.5 1,047,721 - EX28DRAFT_1036 0.66 -0.1 1,047,915 + EX28DRAFT_1036 0.78 -0.1 1,047,916 - EX28DRAFT_1036 0.78 +0.0 1,048,026 - EX28DRAFT_1036 0.85 +0.6 1,048,026 - EX28DRAFT_1036 0.85 -0.0 1,048,194 + -0.2 1,048,194 + -0.6 1,048,194 + +0.0 1,048,195 - -0.2 1,048,265 + +0.1 1,048,265 + +0.3 1,048,265 + +0.4 1,048,266 - +0.2 1,048,269 + +0.7 1,048,269 + -0.1 1,048,269 + +0.5 1,048,270 - -1.1 1,048,270 - +0.7 1,048,272 + +0.8 1,048,272 + +0.0 1,048,306 - +1.1 1,048,387 + +0.7 1,048,490 + EX28DRAFT_1037 0.53 +0.5 1,048,534 + EX28DRAFT_1037 0.71 +1.8 1,048,910 + EX28DRAFT_1038 0.68 -0.3 1,048,911 - EX28DRAFT_1038 0.68 +0.7 1,048,911 - EX28DRAFT_1038 0.68 +0.5 1,048,985 + EX28DRAFT_1038 0.85 +1.6 1,049,009 + -1.8 1,049,097 + +0.0
Or see this region's nucleotide sequence