Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0969 and EX28DRAFT_0970 are separated by 162 nucleotides EX28DRAFT_0970 and EX28DRAFT_0971 are separated by 1 nucleotides EX28DRAFT_0971 and EX28DRAFT_0972 overlap by 1 nucleotides
EX28DRAFT_0969: EX28DRAFT_0969 - TupA-like ATPgrasp, at 970,993 to 971,934
_0969
EX28DRAFT_0970: EX28DRAFT_0970 - ABC-type antimicrobial peptide transport system, ATPase component, at 972,097 to 972,903
_0970
EX28DRAFT_0971: EX28DRAFT_0971 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 972,905 to 973,897
_0971
EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787
_0972
Position (kb) 972
973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 971.125 kb on + strand, within EX28DRAFT_0969 at 971.138 kb on + strand, within EX28DRAFT_0969 at 971.160 kb on + strand, within EX28DRAFT_0969 at 971.160 kb on + strand, within EX28DRAFT_0969 at 971.161 kb on - strand, within EX28DRAFT_0969 at 971.284 kb on + strand, within EX28DRAFT_0969 at 971.284 kb on + strand, within EX28DRAFT_0969 at 971.285 kb on - strand, within EX28DRAFT_0969 at 971.285 kb on - strand, within EX28DRAFT_0969 at 971.304 kb on - strand, within EX28DRAFT_0969 at 971.350 kb on + strand, within EX28DRAFT_0969 at 971.350 kb on + strand, within EX28DRAFT_0969 at 971.350 kb on + strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.351 kb on - strand, within EX28DRAFT_0969 at 971.355 kb on - strand, within EX28DRAFT_0969 at 971.435 kb on + strand, within EX28DRAFT_0969 at 971.436 kb on - strand, within EX28DRAFT_0969 at 971.449 kb on + strand, within EX28DRAFT_0969 at 971.450 kb on - strand, within EX28DRAFT_0969 at 971.450 kb on - strand, within EX28DRAFT_0969 at 971.450 kb on - strand, within EX28DRAFT_0969 at 971.460 kb on + strand, within EX28DRAFT_0969 at 971.566 kb on - strand, within EX28DRAFT_0969 at 971.569 kb on + strand, within EX28DRAFT_0969 at 971.569 kb on + strand, within EX28DRAFT_0969 at 971.572 kb on + strand, within EX28DRAFT_0969 at 971.665 kb on + strand, within EX28DRAFT_0969 at 971.748 kb on + strand, within EX28DRAFT_0969 at 971.777 kb on - strand, within EX28DRAFT_0969 at 971.842 kb on + strand at 972.025 kb on - strand at 972.288 kb on - strand, within EX28DRAFT_0970 at 972.498 kb on + strand, within EX28DRAFT_0970 at 972.798 kb on + strand, within EX28DRAFT_0970
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 971,125 + EX28DRAFT_0969 0.14 -1.2 971,138 + EX28DRAFT_0969 0.15 -0.3 971,160 + EX28DRAFT_0969 0.18 +0.0 971,160 + EX28DRAFT_0969 0.18 +0.6 971,161 - EX28DRAFT_0969 0.18 -0.7 971,284 + EX28DRAFT_0969 0.31 -0.7 971,284 + EX28DRAFT_0969 0.31 +0.5 971,285 - EX28DRAFT_0969 0.31 +0.0 971,285 - EX28DRAFT_0969 0.31 -0.0 971,304 - EX28DRAFT_0969 0.33 -0.9 971,350 + EX28DRAFT_0969 0.38 -1.4 971,350 + EX28DRAFT_0969 0.38 -0.6 971,350 + EX28DRAFT_0969 0.38 -3.8 971,351 - EX28DRAFT_0969 0.38 +0.8 971,351 - EX28DRAFT_0969 0.38 -0.8 971,351 - EX28DRAFT_0969 0.38 -0.6 971,351 - EX28DRAFT_0969 0.38 -0.4 971,355 - EX28DRAFT_0969 0.38 +0.5 971,435 + EX28DRAFT_0969 0.47 -0.0 971,436 - EX28DRAFT_0969 0.47 -0.1 971,449 + EX28DRAFT_0969 0.48 -0.4 971,450 - EX28DRAFT_0969 0.49 -0.1 971,450 - EX28DRAFT_0969 0.49 -0.1 971,450 - EX28DRAFT_0969 0.49 +0.6 971,460 + EX28DRAFT_0969 0.50 -0.2 971,566 - EX28DRAFT_0969 0.61 +0.2 971,569 + EX28DRAFT_0969 0.61 +0.3 971,569 + EX28DRAFT_0969 0.61 -3.5 971,572 + EX28DRAFT_0969 0.61 -0.1 971,665 + EX28DRAFT_0969 0.71 +1.0 971,748 + EX28DRAFT_0969 0.80 +0.3 971,777 - EX28DRAFT_0969 0.83 -0.5 971,842 + -1.1 972,025 - -0.3 972,288 - EX28DRAFT_0970 0.24 -1.5 972,498 + EX28DRAFT_0970 0.50 -2.7 972,798 + EX28DRAFT_0970 0.87 -1.4
Or see this region's nucleotide sequence