Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0952

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0951 and EX28DRAFT_0952 are separated by 148 nucleotidesEX28DRAFT_0952 and EX28DRAFT_0953 are separated by 6 nucleotides EX28DRAFT_0951: EX28DRAFT_0951 - Membrane-associated phospholipid phosphatase, at 951,609 to 952,409 _0951 EX28DRAFT_0952: EX28DRAFT_0952 - Predicted membrane protein, at 952,558 to 952,866 _0952 EX28DRAFT_0953: EX28DRAFT_0953 - Predicted N-acetylglucosaminyl transferase, at 952,873 to 954,042 _0953 Position (kb) 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1at 951.582 kb on + strandat 951.609 kb on - strandat 951.609 kb on - strandat 951.692 kb on + strand, within EX28DRAFT_0951at 951.692 kb on + strand, within EX28DRAFT_0951at 951.746 kb on + strand, within EX28DRAFT_0951at 951.747 kb on - strand, within EX28DRAFT_0951at 951.747 kb on - strand, within EX28DRAFT_0951at 951.755 kb on + strand, within EX28DRAFT_0951at 951.803 kb on + strand, within EX28DRAFT_0951at 951.881 kb on + strand, within EX28DRAFT_0951at 952.013 kb on - strand, within EX28DRAFT_0951at 952.067 kb on + strand, within EX28DRAFT_0951at 952.130 kb on + strand, within EX28DRAFT_0951at 952.418 kb on - strandat 952.435 kb on + strandat 952.494 kb on + strandat 952.494 kb on + strandat 952.554 kb on + strandat 952.647 kb on + strand, within EX28DRAFT_0952at 952.700 kb on + strand, within EX28DRAFT_0952

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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951,582 + +0.3
951,609 - -0.6
951,609 - +0.1
951,692 + EX28DRAFT_0951 0.10 -0.1
951,692 + EX28DRAFT_0951 0.10 -0.5
951,746 + EX28DRAFT_0951 0.17 -0.6
951,747 - EX28DRAFT_0951 0.17 -0.0
951,747 - EX28DRAFT_0951 0.17 +0.6
951,755 + EX28DRAFT_0951 0.18 +0.8
951,803 + EX28DRAFT_0951 0.24 +0.2
951,881 + EX28DRAFT_0951 0.34 +0.6
952,013 - EX28DRAFT_0951 0.50 -0.5
952,067 + EX28DRAFT_0951 0.57 +0.3
952,130 + EX28DRAFT_0951 0.65 -0.2
952,418 - -0.4
952,435 + +0.0
952,494 + -0.1
952,494 + -3.0
952,554 + -0.7
952,647 + EX28DRAFT_0952 0.29 -1.2
952,700 + EX28DRAFT_0952 0.46 -0.6

Or see this region's nucleotide sequence