Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0933 and EX28DRAFT_0934 are separated by 10 nucleotides EX28DRAFT_0934 and EX28DRAFT_0935 are separated by 3 nucleotides
EX28DRAFT_0933: EX28DRAFT_0933 - tryptophan synthase, beta subunit, at 931,491 to 932,684
_0933
EX28DRAFT_0934: EX28DRAFT_0934 - indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 932,695 to 934,053
_0934
EX28DRAFT_0935: EX28DRAFT_0935 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 934,057 to 935,652
_0935
Position (kb) 932
933
934
935 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 931.714 kb on + strand, within EX28DRAFT_0933 at 931.715 kb on - strand, within EX28DRAFT_0933 at 931.792 kb on + strand, within EX28DRAFT_0933 at 931.792 kb on + strand, within EX28DRAFT_0933 at 931.793 kb on - strand, within EX28DRAFT_0933 at 931.849 kb on + strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.143 kb on + strand, within EX28DRAFT_0933 at 932.143 kb on + strand, within EX28DRAFT_0933 at 932.144 kb on - strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.288 kb on - strand, within EX28DRAFT_0933 at 932.427 kb on - strand, within EX28DRAFT_0933 at 932.464 kb on + strand, within EX28DRAFT_0933 at 932.638 kb on + strand at 932.639 kb on - strand at 932.639 kb on - strand at 932.639 kb on - strand at 932.673 kb on + strand at 932.673 kb on + strand at 932.674 kb on - strand at 932.697 kb on - strand at 932.700 kb on - strand at 932.749 kb on - strand at 932.764 kb on + strand at 932.812 kb on + strand at 932.813 kb on - strand at 932.830 kb on + strand at 932.927 kb on + strand, within EX28DRAFT_0934 at 932.927 kb on + strand, within EX28DRAFT_0934 at 932.928 kb on - strand, within EX28DRAFT_0934 at 932.931 kb on + strand, within EX28DRAFT_0934 at 932.931 kb on + strand, within EX28DRAFT_0934 at 932.932 kb on - strand, within EX28DRAFT_0934 at 932.964 kb on + strand, within EX28DRAFT_0934 at 932.965 kb on - strand, within EX28DRAFT_0934 at 933.032 kb on + strand, within EX28DRAFT_0934 at 933.033 kb on - strand, within EX28DRAFT_0934 at 933.108 kb on + strand, within EX28DRAFT_0934 at 933.108 kb on + strand, within EX28DRAFT_0934 at 933.108 kb on + strand, within EX28DRAFT_0934 at 933.134 kb on + strand, within EX28DRAFT_0934 at 933.134 kb on + strand, within EX28DRAFT_0934 at 933.134 kb on + strand, within EX28DRAFT_0934 at 933.135 kb on - strand, within EX28DRAFT_0934 at 933.135 kb on - strand, within EX28DRAFT_0934 at 933.163 kb on - strand, within EX28DRAFT_0934 at 933.163 kb on - strand, within EX28DRAFT_0934 at 933.377 kb on - strand, within EX28DRAFT_0934 at 933.377 kb on - strand, within EX28DRAFT_0934 at 933.669 kb on - strand, within EX28DRAFT_0934 at 933.669 kb on - strand, within EX28DRAFT_0934 at 933.702 kb on + strand, within EX28DRAFT_0934 at 933.706 kb on - strand, within EX28DRAFT_0934 at 933.824 kb on + strand, within EX28DRAFT_0934 at 933.935 kb on + strand at 934.111 kb on + strand at 934.112 kb on - strand at 934.112 kb on - strand at 934.112 kb on - strand at 934.228 kb on + strand, within EX28DRAFT_0935 at 934.290 kb on - strand, within EX28DRAFT_0935 at 934.290 kb on - strand, within EX28DRAFT_0935 at 934.326 kb on - strand, within EX28DRAFT_0935 at 934.326 kb on - strand, within EX28DRAFT_0935 at 934.596 kb on - strand, within EX28DRAFT_0935 at 934.662 kb on + strand, within EX28DRAFT_0935 at 934.674 kb on + strand, within EX28DRAFT_0935 at 934.789 kb on - strand, within EX28DRAFT_0935 at 934.801 kb on - strand, within EX28DRAFT_0935 at 934.828 kb on - strand, within EX28DRAFT_0935
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 931,714 + EX28DRAFT_0933 0.19 -2.4 931,715 - EX28DRAFT_0933 0.19 -3.4 931,792 + EX28DRAFT_0933 0.25 +0.4 931,792 + EX28DRAFT_0933 0.25 -3.3 931,793 - EX28DRAFT_0933 0.25 -0.7 931,849 + EX28DRAFT_0933 0.30 -4.9 932,127 - EX28DRAFT_0933 0.53 -3.4 932,127 - EX28DRAFT_0933 0.53 +0.3 932,127 - EX28DRAFT_0933 0.53 -5.4 932,128 + EX28DRAFT_0933 0.53 -4.6 932,128 + EX28DRAFT_0933 0.53 -3.3 932,128 + EX28DRAFT_0933 0.53 -2.1 932,129 - EX28DRAFT_0933 0.53 -1.1 932,129 - EX28DRAFT_0933 0.53 -4.0 932,129 - EX28DRAFT_0933 0.53 -5.0 932,129 - EX28DRAFT_0933 0.53 -4.0 932,129 - EX28DRAFT_0933 0.53 -5.2 932,129 - EX28DRAFT_0933 0.53 -2.6 932,143 + EX28DRAFT_0933 0.55 -2.0 932,143 + EX28DRAFT_0933 0.55 -5.0 932,144 - EX28DRAFT_0933 0.55 -4.9 932,287 + EX28DRAFT_0933 0.67 -4.1 932,287 + EX28DRAFT_0933 0.67 -6.3 932,287 + EX28DRAFT_0933 0.67 -3.1 932,288 - EX28DRAFT_0933 0.67 -2.4 932,427 - EX28DRAFT_0933 0.78 -2.3 932,464 + EX28DRAFT_0933 0.81 -3.8 932,638 + -3.0 932,639 - -0.8 932,639 - -2.8 932,639 - -5.3 932,673 + -3.8 932,673 + -1.4 932,674 - -2.6 932,697 - -0.0 932,700 - -0.2 932,749 - -3.3 932,764 + -4.3 932,812 + -0.6 932,813 - -2.4 932,830 + -3.6 932,927 + EX28DRAFT_0934 0.17 -2.6 932,927 + EX28DRAFT_0934 0.17 -0.3 932,928 - EX28DRAFT_0934 0.17 -5.4 932,931 + EX28DRAFT_0934 0.17 -4.3 932,931 + EX28DRAFT_0934 0.17 -5.1 932,932 - EX28DRAFT_0934 0.17 -3.2 932,964 + EX28DRAFT_0934 0.20 -3.1 932,965 - EX28DRAFT_0934 0.20 -3.3 933,032 + EX28DRAFT_0934 0.25 -4.6 933,033 - EX28DRAFT_0934 0.25 -6.0 933,108 + EX28DRAFT_0934 0.30 -3.2 933,108 + EX28DRAFT_0934 0.30 -3.0 933,108 + EX28DRAFT_0934 0.30 -2.0 933,134 + EX28DRAFT_0934 0.32 -3.8 933,134 + EX28DRAFT_0934 0.32 -2.9 933,134 + EX28DRAFT_0934 0.32 -3.0 933,135 - EX28DRAFT_0934 0.32 -2.8 933,135 - EX28DRAFT_0934 0.32 -1.6 933,163 - EX28DRAFT_0934 0.34 -2.3 933,163 - EX28DRAFT_0934 0.34 -4.2 933,377 - EX28DRAFT_0934 0.50 -4.3 933,377 - EX28DRAFT_0934 0.50 -1.8 933,669 - EX28DRAFT_0934 0.72 -2.8 933,669 - EX28DRAFT_0934 0.72 -3.6 933,702 + EX28DRAFT_0934 0.74 -0.3 933,706 - EX28DRAFT_0934 0.74 -2.7 933,824 + EX28DRAFT_0934 0.83 +0.7 933,935 + -1.4 934,111 + -1.3 934,112 - -3.4 934,112 - -2.2 934,112 - -3.9 934,228 + EX28DRAFT_0935 0.11 -3.8 934,290 - EX28DRAFT_0935 0.15 -3.5 934,290 - EX28DRAFT_0935 0.15 -4.7 934,326 - EX28DRAFT_0935 0.17 -2.3 934,326 - EX28DRAFT_0935 0.17 -4.0 934,596 - EX28DRAFT_0935 0.34 -3.4 934,662 + EX28DRAFT_0935 0.38 -3.6 934,674 + EX28DRAFT_0935 0.39 -1.0 934,789 - EX28DRAFT_0935 0.46 -0.6 934,801 - EX28DRAFT_0935 0.47 -2.0 934,828 - EX28DRAFT_0935 0.48 -2.0
Or see this region's nucleotide sequence